Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SKPPFSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDP
ASEAKLVEQAFRKR

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bzm:E 95 94 1.0000 0.9895 1.0000 4.93e-67 8bzm:I, 8bzm:A, 8bzm:J
2 2c6y:A 98 94 0.8936 0.8571 0.8936 4.94e-61 2c6y:B
3 7cby:C 100 86 0.5106 0.4800 0.5581 1.31e-34
4 6ako:C 97 93 0.5106 0.4948 0.5161 6.35e-33 6akp:C, 6lbm:C, 6o3t:A, 6o3t:B
5 7vov:A 93 92 0.5000 0.5054 0.5109 1.37e-30 7vou:C, 7vov:B
6 2hdc:A 97 93 0.5000 0.4845 0.5054 3.26e-30
7 7yze:A 87 80 0.4574 0.4943 0.5375 5.85e-27 5x07:F, 5x07:C, 5x07:L, 5x07:I, 7yzf:C
8 8vfy:O 102 94 0.4787 0.4412 0.4787 1.38e-26 8vfz:O, 8vfz:P, 8vg1:O, 8vg2:O, 7vox:A, 7vox:C, 7vox:H, 7vox:B, 1vtn:C
9 6el8:A 89 88 0.4149 0.4382 0.4432 8.42e-23 6el8:D
10 6ncm:A 91 93 0.4362 0.4505 0.4409 3.19e-22 6nce:A, 6ncm:B
11 2a07:J 83 84 0.3936 0.4458 0.4405 1.72e-21 2a07:K, 2a07:F, 2a07:G, 2a07:H, 2a07:I, 2as5:F, 2as5:G
12 3g73:B 95 93 0.4255 0.4211 0.4301 3.13e-20 7fj2:A, 7fj2:B, 7fj2:E, 7fj2:F, 3g73:A
13 7yzb:A 125 99 0.4149 0.3120 0.3939 1.59e-19
14 3co6:C 91 81 0.3936 0.4066 0.4568 2.94e-18 3co7:C, 3co7:F, 3coa:C, 3coa:F, 5dui:A, 5dui:B, 6lbi:C, 6lbi:D, 6lbi:G, 6lbi:H, 6lbi:K, 6lbi:L, 4lg0:A
15 7tdw:A 90 78 0.3723 0.3889 0.4487 3.68e-18 8sro:A, 8sro:C, 8sro:D, 8sro:B, 8srp:J, 8srp:G, 8srp:E, 8srp:D, 8srp:B, 8srp:A, 8srp:F, 8srp:C, 7tdx:A
16 7yza:A 122 79 0.3404 0.2623 0.4051 5.79e-18 7yz7:A, 7yzc:A, 7yzd:A
17 3qrf:G 82 93 0.3936 0.4512 0.3978 1.04e-17 3qrf:F, 3qrf:H, 3qrf:I, 4wk8:F, 4wk8:G
18 2uzk:A 97 81 0.3936 0.3814 0.4568 1.20e-17 2uzk:C
19 3l2c:A 85 79 0.3936 0.4353 0.4684 2.84e-17
20 7yzg:A 121 98 0.3511 0.2727 0.3367 5.45e-15
21 3bg6:A 577 50 0.1809 0.0295 0.3400 0.41 3bg6:B, 3bg6:C, 3bg6:D, 3bg6:E, 3bg6:F, 3bg6:G, 3bg6:H, 3bg7:A, 3bg7:B, 3bg7:C, 3bg7:D, 3bg7:E, 3bg7:F, 3bg7:G, 3bg7:H, 3bly:A, 2f5v:A, 2f6c:A, 3fdy:A, 2igk:A, 2igk:B, 2igk:C, 2igk:D, 2igk:E, 2igk:F, 2igk:G, 2igk:H, 2igm:A, 2igm:B, 2igm:D, 2igm:C, 2igm:E, 2igm:F, 2igm:G, 2igm:H, 2ign:A, 2ign:B, 2ign:D, 2ign:C, 2ign:E, 2ign:F, 2ign:H, 2ign:G, 2igo:A, 2igo:B, 2igo:D, 2igo:C, 2igo:E, 2igo:F, 2igo:H, 2igo:G, 3k4b:A, 3k4c:A, 3k4c:B, 3k4c:C, 3k4c:D, 3k4j:A, 3k4k:A, 3k4l:A, 3k4l:B, 3k4m:A, 3k4m:B, 3k4m:C, 3k4m:D, 3k4m:E, 3k4m:F, 3k4m:G, 3k4m:H, 3k4n:A, 3k4n:B, 3lsh:A, 3lsh:B, 3lsh:C, 3lsh:D, 3lsi:A, 3lsi:B, 3lsk:A, 3lsk:B, 3lsk:C, 3lsk:D, 3lsm:A, 3lsm:B, 4moe:A, 4moe:B, 4moe:C, 4moe:D, 4mof:A, 4mog:A, 4moh:A, 4moi:A, 4moi:B, 4moj:A, 4moj:B, 4moj:C, 4moj:D, 4mok:A, 4mok:B, 4mok:C, 4mok:D, 4mol:A, 4mol:B, 4mol:C, 4mol:D, 4mom:A, 4mom:B, 4mom:C, 4mom:D, 4moo:A, 4mop:A, 4mop:B, 4mop:C, 4mop:D, 4moq:A, 4moq:B, 4mor:A, 4mor:B, 4mor:C, 4mor:D, 4mos:A, 3pl8:A, 1tt0:A, 1tt0:B, 1tt0:C, 1tt0:D, 1tzl:A, 1tzl:B, 1tzl:C, 1tzl:D, 1tzl:E, 1tzl:F, 1tzl:G, 1tzl:H
22 6y9t:A 536 83 0.2553 0.0448 0.2892 2.5 6y9t:B
23 2b5w:A 357 41 0.1596 0.0420 0.3659 2.7 2b5v:A, 2vwg:A, 2vwh:A, 2vwp:A, 2vwq:A
24 8imz:A 1223 26 0.0957 0.0074 0.3462 3.8 8imz:C, 8imz:B
25 7wlu:A 1498 26 0.0957 0.0060 0.3462 3.9 7wlu:C, 7wlu:E
26 7wlt:A 1353 26 0.0957 0.0067 0.3462 4.0 7wlt:C, 7wlt:E
27 6b3r:A 1502 26 0.0957 0.0060 0.3462 4.0 6b3r:C, 6b3r:E
28 3anv:A 373 35 0.1277 0.0322 0.3429 5.3 3anu:A, 3awn:A, 3awo:A
29 3bs0:A 414 25 0.1170 0.0266 0.4400 7.9 3brz:A, 3bs0:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218