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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SKPNIVLIFADDAGFGDFGFQGSTQLKTPNLDKLAQSGVRFTQGYVSDSTSGPSRAGLMTGKYQQRFGYEEINVPGFMSG
NSALKGADMGLPLDQKTMGDYLKEQGYKTAVFGKWHLGDADRFHPLKRGFDTFLGFRGGDRSYFNYSEQEGNKHFFDKKL
ERDFGNYEEPKEYLTDVLGKEAAKYIEQNKDEPFFIYLAFNAVHTPLESDPKDLAKFPNLTGKRKELAAMTLGLDRASGY
VLDKLKELGLDDNTIVVFSNDNGGPSDKNASNNAPLAGTKSNQLEGGIRVPFLISWPKHIKPGSTYDYPVSTLDLLPTFY
SAAKGKALGSDIDGVDLLPYIQGENTARPHKVMYWKKENRAVIRDNDWKLIRYPDRPAELYDLSSDISEQTDLAAKNPER
VKTMFKSLFEWELTLERPRWLLKRKYEKYDIDRMDKYRLPATQP

The query sequence (length=444) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6psm:C 448 447 1.0000 0.9911 0.9933 0.0 6prm:A, 6prm:B, 6prm:C, 6prm:D, 6psm:A, 6psm:B, 6psm:D, 6psm:E, 6psm:F, 6pso:B, 6pso:A
2 6b0j:A 452 441 0.4009 0.3938 0.4036 3.95e-104 6b0j:B, 6b0j:C, 6b0k:A, 6b0k:B, 6b0k:C, 6b1v:A, 6b1v:B, 6b1v:C, 6bia:A, 6bia:B, 6bia:C
3 7stt:A 445 461 0.3626 0.3618 0.3492 3.46e-72 7stu:A, 7stv:A
4 7an1:AAA 483 473 0.3311 0.3043 0.3108 5.40e-62 7oqd:AAA
5 6ust:C 464 467 0.3221 0.3082 0.3062 4.45e-56 6ust:A, 6ust:B, 6ust:D
6 6uss:A 485 463 0.3041 0.2784 0.2916 7.26e-52 6uss:B
7 7ana:AAA 475 465 0.3108 0.2905 0.2968 1.19e-51 7ana:BBB, 7anb:AAA, 7anb:BBB
8 1n2l:A 483 400 0.3108 0.2857 0.3450 7.03e-50 1auk:A, 1e1z:P, 1e2s:P, 1e33:P, 1e3c:P, 1n2k:A
9 7oz9:BBB 483 460 0.3198 0.2940 0.3087 1.67e-49 7oz9:AAA
10 1fsu:A 475 454 0.3221 0.3011 0.3150 2.02e-49
11 4fdi:A 494 393 0.2815 0.2530 0.3181 5.03e-48 4fdi:B, 4fdj:A, 4fdj:B
12 7all:AAA 498 490 0.3176 0.2831 0.2878 2.16e-47
13 7oza:CCC 488 471 0.3153 0.2869 0.2972 5.88e-47 7oza:AAA
14 7oze:AAA 487 489 0.2995 0.2731 0.2720 6.17e-43 7oze:EEE, 7oze:FFF, 7oze:GGG
15 7aj0:A 501 406 0.2613 0.2315 0.2857 8.72e-37 7aj0:B, 7aj0:C, 7aj0:D, 7aj0:E, 7aj0:F
16 9fvt:A 519 446 0.2770 0.2370 0.2758 1.08e-31 9fvt:B, 9fvt:C, 9fvt:D
17 4cys:A 534 528 0.3063 0.2547 0.2576 4.55e-31 5aj9:A, 5aj9:B, 4cxk:A, 4cxk:B, 4cxs:A, 4cxs:B, 4cxu:A, 4cxu:B, 4cyr:A, 4cyr:B, 4cys:B, 1hdh:A, 1hdh:B
18 6j66:B 476 478 0.2973 0.2773 0.2762 2.10e-30 6j66:A
19 8eg3:A 554 142 0.1351 0.1083 0.4225 1.74e-27 1p49:A
20 8eg3:A 554 220 0.1622 0.1300 0.3273 9.30e-24 1p49:A
21 6hr5:A 376 407 0.2545 0.3005 0.2776 8.16e-26
22 8di0:B 426 369 0.2185 0.2277 0.2629 2.76e-25
23 7oz8:AAA 474 470 0.2883 0.2700 0.2723 3.22e-24
24 6s20:C 480 117 0.1284 0.1187 0.4872 6.06e-24
25 6s20:C 480 265 0.1689 0.1562 0.2830 1.49e-21
26 6s21:A 486 406 0.2455 0.2243 0.2685 3.11e-23 6s21:B, 6s21:C
27 7p26:AAA 484 122 0.1126 0.1033 0.4098 1.38e-21
28 7p26:AAA 484 161 0.1059 0.0971 0.2919 8.53e-15
29 5g2v:A 494 311 0.1892 0.1700 0.2701 1.93e-21
30 5g2v:A 494 185 0.1216 0.1093 0.2919 1.16e-10
31 7ozc:AAA 485 117 0.1171 0.1072 0.4444 4.72e-21
32 7ozc:AAA 485 269 0.1441 0.1320 0.2379 2.28e-12
33 4upi:A 548 509 0.2680 0.2172 0.2338 4.56e-20
34 4upl:A 555 516 0.2725 0.2180 0.2345 9.59e-20 4upl:C
35 6pt4:B 473 465 0.2815 0.2643 0.2688 3.68e-18 6pt4:A, 6pt6:B, 6pt6:A, 6pt9:A, 6pt9:B, 6ptk:A, 6ptk:B, 6ptk:C, 6ptk:D
36 4miv:A 484 389 0.2387 0.2190 0.2725 1.02e-17 4mhx:A, 4mhx:B, 4miv:B, 4miv:C, 4miv:D, 4miv:E, 4miv:F, 4miv:G, 4miv:H
37 6hhm:A 459 475 0.2545 0.2462 0.2379 3.27e-17
38 7p24:AAA 494 220 0.1396 0.1255 0.2818 3.87e-17
39 7p24:AAA 494 172 0.1149 0.1032 0.2965 1.71e-09
40 7lj2:A 507 220 0.1419 0.1243 0.2864 8.05e-17 7lha:A, 7lha:B, 7lj2:B
41 7lj2:A 507 164 0.0968 0.0848 0.2622 8.92e-05 7lha:A, 7lha:B, 7lj2:B
42 7ebp:A 526 205 0.1351 0.1141 0.2927 4.73e-16 7ebp:B, 7ebq:A
43 7ebp:A 526 132 0.0743 0.0627 0.2500 4.08e-04 7ebp:B, 7ebq:A
44 4uph:A 504 472 0.2432 0.2143 0.2288 8.54e-16 4uph:B, 4uph:C, 4uph:D
45 3b5q:B 467 435 0.2523 0.2398 0.2575 1.66e-15 3b5q:A, 5g2t:A, 5g2t:B, 5g2t:C, 5g2t:D, 5g2u:A
46 7sno:A 506 214 0.1351 0.1186 0.2804 1.31e-14
47 7sno:A 506 207 0.1104 0.0968 0.2367 8.86e-04
48 2vqr:A 512 510 0.2568 0.2227 0.2235 3.20e-12
49 7pth:A 517 186 0.1306 0.1122 0.3118 1.43e-11 6fny:A, 6fny:B, 6fny:C, 6fny:D, 6fny:E, 6fny:F, 6fny:G, 6fny:H, 6g5z:A, 6g5z:B, 6g5z:C, 6g5z:D, 6g60:A, 6g60:B, 6g60:C, 6g60:D, 7pth:B, 7pth:C, 7pth:D, 7ptj:A, 7ptj:B, 7ptj:C, 7ptj:D
50 7pth:A 517 131 0.0901 0.0774 0.3053 5.93e-08 6fny:A, 6fny:B, 6fny:C, 6fny:D, 6fny:E, 6fny:F, 6fny:G, 6fny:H, 6g5z:A, 6g5z:B, 6g5z:C, 6g5z:D, 6g60:A, 6g60:B, 6g60:C, 6g60:D, 7pth:B, 7pth:C, 7pth:D, 7ptj:A, 7ptj:B, 7ptj:C, 7ptj:D
51 2w8s:B 513 470 0.2207 0.1910 0.2085 5.87e-09 2w8s:A, 2w8s:C, 2w8s:D
52 5fql:A 507 313 0.1509 0.1321 0.2141 8.91e-07 6ioz:A
53 4uor:A 418 202 0.1216 0.1292 0.2673 1.58e-06 4uoo:A, 4uoo:B, 4uoo:C, 4uoo:D, 4uoo:E, 4uor:B, 4uor:C, 4uor:D, 4uor:E, 4uor:F, 4uor:G, 4uor:H, 4uor:I, 4uor:J, 4uor:K
54 6v8q:A 569 294 0.1374 0.1072 0.2075 0.021 6v8q:B, 6vat:A, 6vat:B, 6vat:C, 6vc7:A, 6vc7:B, 6vc7:C, 6vc7:D, 6vc7:E, 6vc7:F, 6vdf:A, 6vdf:C, 6vdf:D
55 4uop:B 409 257 0.1419 0.1540 0.2451 0.063 4uop:A
56 5tcd:A 388 59 0.0428 0.0490 0.3220 0.56 5udy:A
57 4yuu:o2 245 146 0.0856 0.1551 0.2603 2.6 4yuu:O1
58 1nkq:A 247 37 0.0248 0.0445 0.2973 5.4 1nkq:B, 1nkq:C, 1nkq:D, 1nkq:E, 1nkq:F
59 6xkd:A 679 30 0.0270 0.0177 0.4000 8.3
60 5y1f:A 311 24 0.0338 0.0482 0.6250 8.4 5y1e:A, 5y1g:A
61 4gtw:A 706 30 0.0270 0.0170 0.4000 8.4 4gtw:B, 4gtx:A, 4gtx:B, 4gty:A, 4gty:B, 4gtz:A, 4gtz:B, 6xkd:B
62 3lvq:E 420 71 0.0405 0.0429 0.2535 8.5 2b0o:E, 2b0o:F, 2b0o:G, 2b0o:H, 3lvr:E
63 4b56:A 816 30 0.0270 0.0147 0.4000 9.0 6aek:A, 6ael:A, 4b56:B
64 5zal:A 1314 30 0.0270 0.0091 0.4000 9.0 2eb1:A, 2eb1:B, 2eb1:C, 4ngd:A, 5zam:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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