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BioLiP
>protein
SKPGCYDNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCESKPEAEETCFDKYTGNTYRVGDTYERPKDSMIWDCTCIG
AGRGRISCTIANR

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1o9a:A 93 93 1.0000 1.0000 1.0000 8.03e-67
2 2rkz:C 90 48 0.5161 0.5333 1.0000 1.95e-29 3cal:A, 3cal:C, 4pz5:A, 2rkz:A, 2rkz:B, 2rkz:D, 2rkz:E, 2rkz:F, 3zrz:A, 3zrz:B
3 2rkz:C 90 89 0.2903 0.3000 0.3034 3.17e-06 3cal:A, 3cal:C, 4pz5:A, 2rkz:A, 2rkz:B, 2rkz:D, 2rkz:E, 2rkz:F, 3zrz:A, 3zrz:B
4 2rl0:I 79 47 0.2688 0.3165 0.5319 2.69e-10
5 2rl0:I 79 88 0.3441 0.4051 0.3636 3.25e-07
6 2rky:C 92 47 0.2688 0.2717 0.5319 3.15e-10 2rky:A, 2rl0:A, 2rl0:B, 2rl0:D, 2rl0:F, 2rl0:K
7 2rky:C 92 89 0.3441 0.3478 0.3596 4.36e-08 2rky:A, 2rl0:A, 2rl0:B, 2rl0:D, 2rl0:F, 2rl0:K
8 3ejh:A 91 65 0.2473 0.2527 0.3538 3.84e-06 3ejh:B, 3gxe:B, 3gxe:A
9 3ejh:A 91 37 0.1505 0.1538 0.3784 0.053 3ejh:B, 3gxe:B, 3gxe:A
10 3ejh:A 91 31 0.1290 0.1319 0.3871 8.5 3ejh:B, 3gxe:B, 3gxe:A
11 3m7p:A 301 120 0.3118 0.0963 0.2417 0.002
12 3m7p:A 301 58 0.2043 0.0631 0.3276 0.043
13 3m7p:A 301 35 0.1290 0.0399 0.3429 5.2
14 6hrh:A 429 15 0.0753 0.0163 0.4667 1.5 6hrh:B, 5qqq:B, 5qqq:A, 5qqr:B, 5qqr:A, 5qqs:B, 5qqs:A, 5qqt:B, 5qqt:A, 5qqu:B, 5qqu:A, 5qqv:B, 5qqv:A, 5qqw:B, 5qqw:A, 5qqx:B, 5qqx:A, 5qqy:B, 5qqy:A, 5qqz:B, 5qqz:A, 5qr0:B, 5qr0:A, 5qr1:B, 5qr1:A, 5qr2:B, 5qr2:A, 5qr3:B, 5qr3:A, 5qr4:B, 5qr4:A, 5qr5:B, 5qr5:A, 5qr6:B, 5qr6:A, 5qr7:B, 5qr7:A, 5qr8:B, 5qr8:A, 5qr9:B, 5qr9:A, 5qra:B, 5qra:A, 5qrb:B, 5qrb:A, 5qrc:B, 5qrc:A, 5qrd:B, 5qrd:A, 5qre:B, 5qre:A, 5qt3:B, 5qt3:A
15 7rjt:A 902 38 0.1505 0.0155 0.3684 1.7 7rjt:B, 7rjt:C, 7rjt:D, 7rk6:A, 7rk6:B, 7rk6:C, 7rk6:D, 5tj6:A
16 6tek:A 230 28 0.1183 0.0478 0.3929 1.7 6tek:B
17 5xe0:A 457 23 0.1183 0.0241 0.4783 5.4 5zit:A
18 5dy2:A 378 42 0.1075 0.0265 0.2381 6.4 5dxx:A, 5dxy:A, 5dy3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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