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BioLiP
>protein
SKNVVIYADGVYDMLHLGHMKQLEQAKKLFENTTLIVGVTSDNETKLFKGQVVQTLEERTETLKHIRWVDEIISPCPWVV
TPEFLEKYKIDYVAHDDIEDIYAWLKRAGKFKATQRTEGVSTTDLIVRILKNYEDY

The query sequence (length=136) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4zcs:A 141 141 0.9853 0.9504 0.9504 5.48e-95 7pui:A, 7pve:A, 7pvf:A, 7pvg:A, 7py9:A, 7pya:A, 7pyb:A, 7pyc:A, 7q2i:A, 7q2k:A, 7q2l:A, 7q2m:A, 7q2v:A, 7q3m:A, 7q3w:A, 7q9v:A, 7q9w:A, 7qa7:A, 7qad:A, 7qd3:A, 7qvn:A, 7qvo:A, 7z9v:A, 4zcp:A, 4zcq:A, 4zcr:A, 4zcs:C, 4zcs:E, 4zcs:B, 4zcs:D, 4zcs:F
2 4mvd:B 253 142 0.5221 0.2806 0.5000 1.24e-47 3hl4:A, 3hl4:B, 4mvc:A, 4mvc:B, 4mvd:A, 4mvd:D, 4mvd:C, 4mvd:F, 4mvd:E, 4mvd:H, 4mvd:G
3 4xsv:A 306 136 0.4265 0.1895 0.4265 9.35e-31 3elb:A
4 4xsv:A 306 139 0.3676 0.1634 0.3597 3.42e-19 3elb:A
5 1coz:A 126 125 0.3162 0.3413 0.3440 2.42e-13 1coz:B, 1n1d:A, 1n1d:B, 1n1d:C, 1n1d:D
6 3glv:B 122 44 0.1250 0.1393 0.3864 0.002
7 5x3d:A 126 93 0.1691 0.1825 0.2473 0.007
8 1s4m:A 277 87 0.1985 0.0975 0.3103 0.42 1s4m:B, 1t6x:A, 1t6x:B, 1t6y:A, 1t6y:B, 1t6z:A, 1t6z:B
9 5ts2:A 165 72 0.1618 0.1333 0.3056 0.95 4ruk:A, 4ruk:F, 4ruk:B, 4ruk:E, 4ruk:C, 4ruk:D, 5ts2:B, 5ts2:C, 5ts2:D, 5ts2:E, 5ts2:F, 3x1j:A, 3x1j:C, 3x1j:B, 3x1k:A, 3x1k:B, 3x1k:C, 3x1k:D, 3x1k:E, 3x1k:F, 3x1m:A, 3x1m:C, 3x1m:B
10 4rw3:A 279 42 0.0882 0.0430 0.2857 1.4 3rlg:A, 3rlh:A, 4rw5:A
11 1od6:A 155 33 0.0956 0.0839 0.3939 2.8
12 2rvn:A 83 44 0.1103 0.1807 0.3409 3.4
13 6gyf:B 366 64 0.1471 0.0546 0.3125 3.9 6gye:A, 6gye:B, 6gyf:A, 6gzo:A, 6gzo:B
14 1o6b:A 163 103 0.1765 0.1472 0.2330 4.8
15 3nd6:A 152 60 0.1103 0.0987 0.2500 5.4 3nd6:B, 3nd6:C, 3nd6:D, 3nd6:E, 3nd6:F, 3nd7:A, 3nd7:B, 3nd7:C, 3nd7:D, 3nd7:E, 3nd7:F
16 4bkm:A 304 66 0.1250 0.0559 0.2576 7.3 4bkm:B, 4bkm:C, 4bkm:D
17 2de3:B 347 22 0.0662 0.0259 0.4091 8.8 2de3:A, 2de4:A, 2de4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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