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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SKNVVIYADGVYDMLHLGHMKQLEQAKKLFENTTLIVGVTSDNETKLFKGQVVQTLEERTETLKHIRWVDEIISPCPWVV
TPEFLEKYKIDYVAHDDDIYAWLKRAGKFKATQRTEGVSTTDLIVRILKNYE

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4zcs:A 141 140 0.9924 0.9291 0.9357 1.25e-92 7pui:A, 7pve:A, 7pvf:A, 7pvg:A, 7py9:A, 7pya:A, 7pyb:A, 7pyc:A, 7q2i:A, 7q2k:A, 7q2l:A, 7q2m:A, 7q2v:A, 7q3m:A, 7q3w:A, 7q9v:A, 7q9w:A, 7qa7:A, 7qad:A, 7qd3:A, 7qvn:A, 7qvo:A, 7z9v:A, 4zcp:A, 4zcq:A, 4zcr:A, 4zcs:C, 4zcs:E, 4zcs:B, 4zcs:D, 4zcs:F
2 4mvd:B 253 140 0.5227 0.2727 0.4929 2.81e-46 3hl4:A, 3hl4:B, 4mvc:A, 4mvc:B, 4mvd:A, 4mvd:D, 4mvd:C, 4mvd:F, 4mvd:E, 4mvd:H, 4mvd:G
3 4xsv:A 306 136 0.4394 0.1895 0.4265 3.65e-31 3elb:A
4 4xsv:A 306 139 0.3712 0.1601 0.3525 1.40e-18 3elb:A
5 1coz:A 126 125 0.3106 0.3254 0.3280 1.15e-11 1coz:B, 1n1d:A, 1n1d:B, 1n1d:C, 1n1d:D
6 5x3d:A 126 101 0.1894 0.1984 0.2475 8.45e-04
7 3glv:B 122 44 0.1288 0.1393 0.3864 0.003
8 1s4m:A 277 87 0.2045 0.0975 0.3103 0.40 1s4m:B, 1t6x:A, 1t6x:B, 1t6y:A, 1t6y:B, 1t6z:A, 1t6z:B
9 5ts2:A 165 67 0.1364 0.1091 0.2687 0.99 4ruk:A, 4ruk:F, 4ruk:B, 4ruk:E, 4ruk:C, 4ruk:D, 5ts2:B, 5ts2:C, 5ts2:D, 5ts2:E, 5ts2:F, 3x1j:A, 3x1j:C, 3x1j:B, 3x1k:A, 3x1k:B, 3x1k:C, 3x1k:D, 3x1k:E, 3x1k:F, 3x1m:A, 3x1m:C, 3x1m:B
10 6aje:A 378 62 0.1515 0.0529 0.3226 1.2 6aj5:A, 6aj5:B, 6aj5:C, 6aj5:D, 6aje:B, 6aje:C, 6aje:D
11 5ti1:H 430 32 0.0833 0.0256 0.3438 1.8 5ti1:A, 5ti1:B, 5ti1:C, 5ti1:D, 5ti1:E, 5ti1:F, 5ti1:G
12 1od6:A 155 33 0.0985 0.0839 0.3939 2.6
13 2rvn:A 83 44 0.1136 0.1807 0.3409 2.9
14 3o05:A 261 77 0.1439 0.0728 0.2468 3.2 3o05:B, 3o05:C
15 6gyf:B 366 64 0.1515 0.0546 0.3125 3.7 6gye:A, 6gye:B, 6gyf:A, 6gzo:A, 6gzo:B
16 3nd6:A 152 60 0.1136 0.0987 0.2500 5.0 3nd6:B, 3nd6:C, 3nd6:D, 3nd6:E, 3nd6:F, 3nd7:A, 3nd7:B, 3nd7:C, 3nd7:D, 3nd7:E, 3nd7:F
17 2pbj:A 274 88 0.1970 0.0949 0.2955 5.0 2pbj:B, 2pbj:C, 2pbj:D, 1z9h:A, 1z9h:B, 1z9h:C, 1z9h:D
18 4bkm:A 304 66 0.1288 0.0559 0.2576 6.4 4bkm:B, 4bkm:C, 4bkm:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218