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BioLiP
>protein
SKLTEGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGE

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4bd3:A 58 58 1.0000 1.0000 1.0000 8.78e-39 6wau:A, 6wau:F, 6wau:B, 6wau:D, 6wau:C, 6wau:E
2 2m0o:A 79 54 0.5690 0.4177 0.6111 1.64e-19
3 5xfo:A 315 58 0.6207 0.1143 0.6207 2.07e-19 8h43:A, 8h43:B, 8h43:C, 4hcz:A, 4hcz:B, 7lky:B, 7lky:H, 7lky:A, 7lky:C, 7lky:D, 7lky:E, 7lky:F, 7lky:G, 6wat:AA, 6wat:AC, 6wat:BA, 6wat:BC, 6wat:CA, 6wat:CC, 6wat:DA, 6wat:DC, 6wat:EC, 6wat:EA, 6wat:FA, 6wat:FC, 6wat:GA, 6wat:GC, 6wat:HA, 6wat:HC, 6wat:IA, 6wat:IC, 6wat:JA, 6wat:JC, 6wat:KA, 6wat:KC, 6wat:OC, 6wat:LA, 6wat:LC, 6wat:MA, 6wat:MC, 6wat:NA, 6wat:NC, 6wat:OA, 6wav:A, 6wav:C, 6wav:B, 6wav:D, 5xfn:A, 5xfp:B, 5xfp:A, 5xfp:E, 5xfq:A, 5xfq:B
4 5xfr:A 309 54 0.5690 0.1068 0.6111 7.12e-18 5xfr:B
5 2gfa:B 110 47 0.3276 0.1727 0.4043 0.027 5d6y:A, 5d6y:D, 5d6y:B, 5d6y:C, 2gfa:A, 2qqs:A, 2qqs:B, 5var:A
6 4qg5:A 565 35 0.2241 0.0230 0.3714 0.39 4qg5:B, 4qg5:C, 4qg5:D
7 7bgd:b 163 29 0.1897 0.0675 0.3793 0.79
8 4qro:A 332 30 0.1552 0.0271 0.3000 1.2 4qro:B, 4qro:C, 4qro:D, 4qro:E, 4qro:F, 4qro:G, 4qro:H
9 5x51:M 1386 41 0.2241 0.0094 0.3171 5.1 5x4z:A, 5x51:A, 8yfr:A
10 6ow0:B 301 55 0.2759 0.0532 0.2909 6.6 6ovx:A, 6ovx:B
11 6ow0:A 323 46 0.2414 0.0433 0.3043 7.7
12 5mpf:B 202 46 0.2241 0.0644 0.2826 8.3 5mpf:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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