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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SKKPVALIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHTTLKACGEAVGLPEGQMGNAEVGHLNIGAGRIVYQSLTR
INIAIREGEFDRNETFLAAMNHVKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAP
QYIKELQEKIKEYGVGEIATLSGRYYSMDRDKRWDRVEKAYRAMVYGEGPTYRDPLECIEDSYKHGIYDEFVLPSVIVRE
DGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHPKHLFFVCLTHFSETVAGYVAFKPTNLDNTIGEVL
SQHGLRQLRIAETEKYPHVTFFMSGGREEEFPGEDRILINSPKVPTYDLKPEMSAYEVTDALLKEIEADKYDAIILNYAN
PDMVGHSGKLEPTIKAVEAVDECLGKVVDAILAKGGIAIITADHGNADEVLTPDGKPQTAHTTNPVPVIVTKKGIKLRDG
GILGDLAPTMLDLLGLPQPKEMTGKSLIV

The query sequence (length=509) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1o98:A 509 509 0.9980 0.9980 0.9980 0.0 1ejj:A, 1eqj:A, 1o99:A
2 2ify:A 508 507 0.7800 0.7815 0.7830 0.0
3 4nwj:A 504 509 0.6169 0.6230 0.6169 0.0 4my4:A, 4nwx:A, 4qax:A, 7tl8:A
4 5vpu:A 509 511 0.4892 0.4892 0.4873 2.29e-164
5 7tl7:A 531 515 0.4224 0.4049 0.4175 7.01e-142 5kgl:A, 5kgl:B, 5kgm:A, 5kgm:B, 5kgn:A, 5kgn:B, 7knf:A, 7knf:B, 7kng:A, 7kng:B, 7tl7:B, 7tl7:C, 7tl7:D
6 3nvl:A 549 533 0.3733 0.3461 0.3565 1.02e-96 3nvl:B
7 3igy:B 549 531 0.3458 0.3206 0.3315 6.47e-88 3igz:B
8 2zkt:B 381 138 0.0707 0.0945 0.2609 1.58e-05
9 2zkt:A 330 138 0.0707 0.1091 0.2609 2.64e-05
10 4v6w:AR 120 87 0.0393 0.1667 0.2299 0.010 6xu6:AR, 6xu7:AR, 6xu8:AR
11 2vqr:A 512 104 0.0629 0.0625 0.3077 0.013
12 7p24:AAA 494 142 0.0747 0.0769 0.2676 0.035
13 2w8s:B 513 105 0.0609 0.0604 0.2952 0.076 2w8s:A, 2w8s:C, 2w8s:D
14 4miv:A 484 134 0.0629 0.0661 0.2388 0.11 4mhx:A, 4mhx:B, 4miv:B, 4miv:C, 4miv:D, 4miv:E, 4miv:F, 4miv:G, 4miv:H
15 7lj2:A 507 109 0.0609 0.0611 0.2844 0.18 7lha:A, 7lha:B, 7lj2:B
16 3b5q:B 467 111 0.0648 0.0707 0.2973 0.33 3b5q:A, 5g2t:A, 5g2t:B, 5g2t:C, 5g2t:D, 5g2u:A
17 7sno:A 506 109 0.0589 0.0593 0.2752 0.41
18 8ifd:2y 135 92 0.0393 0.1481 0.2174 0.58 7a01:C3, 7a09:w, 5a2q:R, 5aj0:BR, 9bdl:AS17, 9bdn:AS17, 9bdp:AS17, 8bhf:S3, 9bkd:M, 9bln:M, 8btk:Aq, 7cpu:SR, 7cpv:SR, 6d90:SS, 6d9j:SS, 9f1b:Aq, 9f1c:Aq, 9f1d:Aq, 6fec:e, 5flx:R, 6g18:R, 6g4s:R, 6g4w:R, 6g51:R, 6g53:R, 6g5h:R, 6g5i:R, 8g5y:SR, 8g5z:SR, 8g60:SR, 8g61:SR, 8g6j:SR, 8glp:SR, 6gz3:BR, 6gz4:BR, 6gz5:BR, 6hcf:S1, 6hcj:S2, 6hcm:S1, 6hcq:S2, 8ife:2y, 6ip5:2y, 6ip6:2y, 6ip8:2y, 3j7p:SR, 3j7r:SR, 3jag:RR, 3jah:RR, 3jai:RR, 3jaj:SR, 3jan:SR, 8jdj:AD, 8jdk:AD, 8jdl:AD, 8jdm:AD, 7jqb:S, 7jqc:S, 5k0y:e, 8k2c:SR, 7k5i:R, 4kzx:R, 4kzy:R, 4kzz:R, 5lks:SR, 7ls1:z2, 7ls2:z2, 5lzs:RR, 5lzt:RR, 5lzu:RR, 5lzv:RR, 5lzw:RR, 5lzx:RR, 5lzy:RR, 5lzz:RR, 7mdz:RR, 7mq8:NU, 7mqa:NU, 6mtb:RR, 6mtc:RR, 6mtd:RR, 6mte:RR, 7nwg:S2, 7nwh:RR, 7nwi:RR, 7o7y:Aq, 7o7z:Aq, 7o80:Aq, 7o81:Aq, 5oa3:R, 6ole:SR, 6olf:SR, 6olg:BR, 6oli:SR, 6olz:BR, 6om0:SR, 6om7:SR, 7oya:R2, 7oyb:R2, 7oyc:R2, 7oyd:RR, 8oz0:v, 8p03:T, 8p09:T, 8p2k:Aq, 6p4g:S, 6p4h:S, 6p5i:S, 6p5j:S, 6p5k:S, 6p5n:S, 8pj1:M, 8pj2:M, 8pj3:M, 8pj4:M, 8pj5:M, 8pj6:M, 8ppk:R, 8ppl:AR, 8q7z:Aq, 8q87:Aq, 7qgg:SR, 8qoi:SR, 7qp6:M, 7qp7:M, 7qvp:SR, 7qvp:RR, 6qzp:SR, 7r4x:R, 6r5q:KK, 6r6g:KK, 6r6p:YY, 6r7q:KK, 8scb:RR, 6sgc:S1, 7syg:S, 7syh:S, 7syi:S, 7syj:S, 7syk:S, 7syl:S, 7sym:S, 7syn:S, 7syo:S, 7syp:S, 7syq:S, 7syr:S, 7sys:S, 7syt:S, 7syu:S, 7syv:S, 7syw:S, 7syx:S, 5t2c:Az, 8t4s:R, 7toq:AS17, 7tor:AS17, 7tql:S, 7ucj:RR, 7uck:RR, 4ug0:SR, 4v6x:AR, 5vyc:R1, 5vyc:R2, 5vyc:R3, 5vyc:R4, 5vyc:R5, 5vyc:R6, 6w2s:S, 6w2t:S, 7wtt:R, 7wtu:R, 7wtv:R, 7wtw:R, 7wtx:R, 7wtz:R, 7wu0:R, 6xa1:SR, 7xnx:SR, 7xny:SR, 8xsx:SR, 8xsy:SR, 8xsz:SR, 8xxl:SR, 8xxm:SR, 8xxn:SR, 6y0g:SR, 8y0w:SR, 8y0x:SR, 6y2l:SR, 6y57:SR, 6yal:T, 6yam:T, 6yan:T, 6ybs:X, 6ybw:M, 8yoo:SR, 8yop:SR, 6z6l:SR, 6z6m:SR, 6z6n:SR, 7zjw:Sc, 7zjx:Sc, 6zlw:S, 6zm7:SR, 6zme:SR, 6zmi:SR, 6zmo:SR, 6zmt:S, 6zmw:M, 6zn5:S, 6zoj:R, 6zok:R, 6zol:R, 6zon:w, 6zp4:w, 6zuo:R, 6zv6:R, 6zvh:R, 6zvj:w, 6zvk:C3, 6zxd:R, 6zxe:R, 6zxf:R, 6zxg:R, 6zxh:R
19 6hhm:A 459 105 0.0609 0.0675 0.2952 0.92
20 4d5l:R 109 83 0.0373 0.1743 0.2289 1.4 4d61:R, 4ujc:CR, 4ujd:CR, 4uje:BR
21 7oz8:AAA 474 144 0.0707 0.0759 0.2500 1.7
22 1pgu:B 608 45 0.0314 0.0263 0.3556 3.0 1pgu:A, 1pi6:A
23 5ce9:A 339 65 0.0413 0.0619 0.3231 3.3 5ce9:B
24 4lr7:A 391 129 0.0688 0.0895 0.2713 5.1 4lr7:B, 4lr7:C, 4lr8:A, 4lr8:B, 4lr8:C, 4lr9:A, 4lr9:B, 4lr9:C, 4lra:A, 4lra:B, 4lra:C, 4lrb:A, 4lrb:B, 4lrb:C, 4lrc:A, 4lrc:B, 4lrc:C, 4lrd:A, 4lre:A, 4lre:B, 4lre:C, 4lrf:A, 4lrf:B, 4lrf:C, 3m8w:A, 3m8w:B, 3m8w:C, 3m8y:A, 3m8y:B, 3m8y:C, 3m8z:A, 3m8z:B, 3m8z:C, 3ot9:A, 3ot9:B, 3ot9:C, 3twz:A, 3tx0:A, 3un2:A, 3un2:B, 3un2:C, 3un3:A, 3un3:B, 3un3:C, 3un5:A, 3un5:B, 3un5:C, 3un5:D, 3un5:E, 3un5:F, 3uny:A, 3uny:B, 3uny:C, 3uny:D, 3uny:E, 3uny:F, 3uo0:A, 3uo0:B, 3uo0:C
25 4dik:A 402 84 0.0472 0.0597 0.2857 7.0 4dik:B, 4dil:A, 4dil:B, 5v8s:A, 5v8s:B, 1vme:A, 1vme:B
26 6a4z:A 127 16 0.0236 0.0945 0.7500 8.1 6a4z:B, 7w5e:A, 7w5e:B, 7w5e:C, 7w5e:D, 7wb2:A, 7wb2:B, 7wb2:C, 7wb2:D
27 1q2l:A 937 92 0.0413 0.0224 0.2283 9.5
28 2cir:A 288 41 0.0275 0.0486 0.3415 9.7 2ciq:A, 2cis:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218