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BioLiP
>protein
SKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIK
RTGIQEMREALQEKEEQIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKV
PPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTIDRTPWGELE

The query sequence (length=231) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8i0r:2 250 250 1.0000 0.9240 0.9240 6.39e-169 8ch6:E, 6ff4:8, 6ff7:8, 8i0p:2, 8i0s:2, 8i0t:2, 8i0u:2, 8i0v:2, 8qo9:B2, 7qtt:E, 6qx9:B2, 8qxd:B2, 8r08:B2, 8r0a:B2, 8r0b:B2
2 7vpx:2 187 227 0.7835 0.9679 0.7974 1.33e-120 7evo:2, 8hk1:2, 7onb:I, 7q4o:B, 7q4p:B, 6y50:8
3 7dvq:2 216 242 0.8009 0.8565 0.7645 1.13e-118 7abh:T, 7abi:T, 8y7e:2, 5z56:2, 5z57:2, 5z58:2
4 7q3l:B 110 130 0.4416 0.9273 0.7846 1.29e-63
5 7dco:2 220 202 0.3506 0.3682 0.4010 4.57e-39 6g90:Q, 5gm6:H, 5nrl:Q, 5zwm:2
6 7s7b:F 352 54 0.0823 0.0540 0.3519 0.057 7s7b:B, 7s7c:B
7 1gxu:A 88 28 0.0519 0.1364 0.4286 0.074
8 6dbb:A 504 58 0.0779 0.0357 0.3103 1.8 6dbb:B, 6dbb:C
9 2r02:A 697 73 0.0996 0.0330 0.3151 2.0 3c3o:A, 3c3q:A, 3c3r:A, 2r03:A, 2r05:A, 5v3r:A, 5wa1:A, 2xs1:A, 2xs8:A
10 5ow0:B 251 26 0.0476 0.0438 0.4231 4.1
11 6n9u:H 645 49 0.0779 0.0279 0.3673 5.4 6n9v:H, 6n9w:H, 6n9x:H, 6p7e:D
12 8eew:A 766 66 0.0823 0.0248 0.2879 5.9 8eew:B, 8eff:A, 8eff:B, 8eff:C, 8eff:D, 8efr:A, 8efr:B, 8efr:C, 8efr:K, 8efr:D, 8efr:L, 8efr:E, 8efr:M, 8efr:F, 8efr:N, 8efr:G, 8efr:O, 8efr:H, 8efr:P, 8efr:I, 8efr:Q, 8efr:J, 8efr:R, 6jtg:A
13 6p7e:C 672 49 0.0779 0.0268 0.3673 7.6 1sl0:A, 1sl0:C
14 2ajq:A 704 49 0.0779 0.0256 0.3673 7.7 2ajq:F, 6n7w:H, 6p7e:A, 6p7e:B, 1t8e:A, 1tk0:A, 1tk8:A, 1tkd:A
15 1sks:A 681 49 0.0779 0.0264 0.3673 8.5 1skr:A, 1skw:A, 1sl1:A, 1sl2:A, 1t7p:A, 1tk5:A, 1x9m:A, 1x9s:A, 1x9w:A, 1zyq:A
16 4pab:B 824 28 0.0476 0.0133 0.3929 9.0 5l46:A, 5l46:B, 4p9s:A, 4p9s:B, 4paa:A, 4paa:B, 4pab:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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