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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SKIYEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVEPTNGNTGIALAYVA
AARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEI
WEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNLDL
KLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLF

The query sequence (length=315) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1d6s:A 322 315 0.9968 0.9752 0.9968 0.0 1d6s:B, 1fcj:A, 1fcj:B, 1fcj:C, 1fcj:D, 1oas:A, 1oas:B, 6z4n:AAA, 6z4n:BBB
2 5dbh:X 312 310 0.6921 0.6987 0.7032 7.31e-144 6aif:A, 5dbe:X, 7djq:A, 3iqg:X, 3iqh:X, 3iqi:X, 4li3:X, 4nu8:X, 4ore:X, 1y7l:A, 7yod:A, 7yoh:A, 7yoi:A, 7yol:A, 7yom:A, 4zu1:X, 4zu6:X
3 5xoq:A 310 315 0.6254 0.6355 0.6254 2.32e-128 5xoq:B
4 4aec:A 323 316 0.5746 0.5604 0.5728 1.03e-106 4aec:B
5 2q3d:A 306 313 0.5587 0.5752 0.5623 6.91e-104 2q3c:A, 3zei:A
6 4lma:A 318 319 0.5714 0.5660 0.5643 5.44e-103 4lma:B
7 2isq:A 320 315 0.5556 0.5469 0.5556 2.48e-100 1z7w:A, 1z7y:A
8 4lmb:A 310 317 0.5619 0.5710 0.5584 3.96e-100
9 7n2t:A 309 315 0.5397 0.5502 0.5397 1.50e-98
10 3bm5:A 338 317 0.4730 0.4408 0.4700 4.44e-87 3bm5:B, 4il5:A, 4jbl:B, 4jbn:A, 2pqm:A, 2pqm:B
11 3vbe:C 329 318 0.4667 0.4468 0.4623 2.61e-86 3vbe:A, 3vbe:B, 3vbe:D, 3vc3:A, 3vc3:B, 3vc3:C, 3vc3:D, 3vc3:E, 3vc3:F
12 8b9w:A 329 307 0.4794 0.4590 0.4919 1.17e-85 8b9w:B
13 3t4p:A 319 304 0.4889 0.4828 0.5066 1.71e-85 3tbh:A
14 8b9y:C 330 307 0.4603 0.4394 0.4723 2.78e-82 8b9y:A, 8b9y:B, 8b9y:D
15 6kr5:B 336 318 0.4667 0.4375 0.4623 1.76e-81 6kr5:A
16 2eco:A 302 312 0.4603 0.4801 0.4647 8.48e-70 2ecq:A, 2efy:A, 2efy:B, 1ve1:A
17 2bht:A 294 307 0.4095 0.4388 0.4202 4.10e-69 2bhs:A, 2bhs:B, 2bhs:C, 2bhs:D, 2bht:B, 2bht:C, 2bht:D, 2jc3:A, 2jc3:H, 2jc3:B, 2jc3:C, 2jc3:D, 2jc3:E, 2jc3:F, 2jc3:G, 2v03:A
18 3x44:A 321 305 0.4381 0.4299 0.4525 5.32e-66 3x43:A, 3x43:B, 3x43:C, 3x43:D, 3x43:E, 3x43:F, 3x43:G, 3x43:H, 3x44:B
19 4air:A 304 304 0.4286 0.4441 0.4441 6.20e-66 4air:B
20 5xem:A 302 303 0.4032 0.4205 0.4191 1.93e-64 5xem:B, 5xen:A, 5xen:B, 5xeo:A, 5xeo:B
21 8s5h:A 507 317 0.3968 0.2465 0.3943 6.52e-59 4coo:A, 4coo:B, 1jbq:A, 1jbq:B, 1jbq:C, 1jbq:D, 1jbq:E, 1jbq:F, 4l0d:A, 4l0d:B, 4l27:B, 4l27:D, 4l27:A, 4l27:C, 4l28:A, 4l28:B, 4l28:C, 4l28:D, 4l3v:B, 4l3v:A, 4l3v:C, 1m54:A, 1m54:B, 1m54:C, 1m54:D, 1m54:E, 1m54:F, 5mms:A, 5mms:F, 5mms:B, 5mms:C, 5mms:D, 5mms:E, 4pcu:A, 4pcu:B, 7qgt:A, 7qgt:B, 8s5h:B, 8s5h:C, 8s5h:D, 8s5h:E, 8s5h:F, 8s5h:G, 8s5h:H, 8s5i:A, 8s5i:B, 8s5i:C, 8s5i:D, 8s5i:E, 8s5i:F, 8s5j:A, 8s5j:B, 8s5j:C, 8s5j:D, 8s5j:E, 8s5j:F, 8s5j:G, 8s5j:H, 8s5j:I, 8s5j:J, 8s5k:A, 8s5k:B, 8s5k:C, 8s5k:D, 8s5k:E, 8s5k:F, 8s5k:G, 8s5k:H, 8s5l:A, 8s5l:B, 8s5l:C, 8s5l:D, 8s5m:A, 8s5m:B, 8s5m:C, 8s5m:D, 8s5m:E, 8s5m:F, 8s5m:G, 8s5m:H, 8s5m:I, 8s5m:J, 8stw:A, 8stw:B, 8stw:C, 8stw:D, 8stw:E, 8stw:F, 4uuu:A, 4uuu:B
22 6ahi:B 306 306 0.3778 0.3889 0.3889 6.13e-58
23 7mfj:BBB 319 306 0.3460 0.3417 0.3562 6.36e-55
24 5b1i:A 303 306 0.3810 0.3960 0.3922 1.44e-54 5b1i:B, 5b1i:C, 5b1i:D, 5b1i:E, 5b1i:F, 5b1i:G, 5b1i:H
25 7xnz:B 458 330 0.4095 0.2817 0.3909 1.61e-52 7xnz:A, 7xnz:C, 7xnz:D, 7xoh:B, 7xoh:A, 7xoh:C, 7xoh:D, 7xoy:B, 7xoy:A, 7xoy:C, 7xoy:D
26 5ohx:A 488 315 0.4063 0.2623 0.4063 2.01e-52 5ohx:B
27 6xwl:C 477 306 0.3746 0.2474 0.3856 6.88e-50 6xwl:F, 6xwl:A, 6xwl:B, 6xwl:D, 6xwl:E, 6xyl:A, 6xyl:B, 6xyl:C, 6xyl:D, 6xyl:E, 6xyl:F, 6y21:D, 6y21:A, 6y21:B, 6z3s:D, 6z3s:A, 6z3s:B, 6zs7:D, 6zs7:A, 6zs7:B, 6zs7:C, 6zs7:E, 6zs7:F
28 6c2h:A 345 316 0.3619 0.3304 0.3608 1.64e-48 6c2q:A, 6c2z:A, 6c4p:A
29 3dwg:A 325 321 0.3524 0.3415 0.3458 2.80e-46 3dwg:B, 3dwi:A, 3dwi:B, 5i6d:B, 5i6d:C, 5i6d:D, 5i7a:B, 5i7a:C, 5i7a:D, 5i7h:B, 5i7h:C, 5i7h:D, 5i7o:B, 5i7o:C, 5i7o:D, 5i7r:B, 5i7r:A, 5iw8:A, 5iw8:B
30 6vju:B 317 311 0.3937 0.3912 0.3987 3.99e-46
31 3pc3:A 504 305 0.3619 0.2262 0.3738 5.77e-44 3pc2:A, 3pc4:A
32 6xo2:A 294 306 0.3111 0.3333 0.3203 7.34e-44 7mfj:AAA, 6pmu:A, 6pmu:B
33 5iwc:A 297 321 0.3333 0.3535 0.3271 3.04e-39 5i6d:A, 5i7a:A, 5i7h:A, 5i7o:A, 5iwc:B
34 5d84:A 318 313 0.3143 0.3113 0.3163 2.06e-37 5d85:A, 5d86:A, 5d87:A
35 5z5c:B 336 307 0.3397 0.3185 0.3485 4.65e-37 5b53:A, 5b55:A, 5b55:B, 5z5c:A, 5z5c:C, 5z5c:D
36 8if7:A 342 294 0.2730 0.2515 0.2925 8.34e-18
37 5b36:B 383 303 0.2635 0.2167 0.2739 3.96e-14 5b36:A, 5b3a:A, 5b3a:B, 6l0p:A, 6l0p:B, 6l0p:C, 6l0p:D, 6l0q:A, 6l0q:B, 6l0q:C, 6l0q:D, 6l0r:A, 6l0r:B, 6l0r:C, 6l0r:D, 6l0s:A, 6l0s:B, 6l0s:C, 6l0s:D, 3vsa:A, 3vsa:B, 3vsc:A, 3vsc:B, 3vsd:A, 3vsd:B, 1wkv:A, 1wkv:B
38 8h4q:N 488 256 0.2095 0.1352 0.2578 3.75e-11 8h4h:N, 8h4h:A, 8h4q:A
39 8y1j:A 502 308 0.2444 0.1534 0.2500 3.22e-10 8y1j:B
40 7nbc:AAA 323 304 0.2222 0.2167 0.2303 5.41e-06 3hmk:A, 3hmk:B, 3l6b:A, 3l6c:A, 3l6c:B, 3l6r:A, 7nbc:BBB, 7nbc:CCC, 7nbc:DDD, 7nbd:AAA, 7nbd:BBB, 7nbd:DDD, 7nbd:CCC, 7nbf:AAA, 7nbf:CCC, 7nbf:BBB, 7nbf:DDD, 7nbg:AAA, 7nbg:BBB, 7nbg:CCC, 7nbg:DDD, 7nbh:AAA, 7nbh:BBB, 7nbh:CCC, 7nbh:DDD, 6slh:AAA, 6slh:BBB, 6slh:CCC, 6slh:DDD, 5x2l:A, 5x2l:B, 6zsp:AAA, 6zsp:BBB, 6zuj:AAA, 6zuj:BBB, 6zuj:CCC, 6zuj:DDD
41 5ixj:D 394 282 0.2413 0.1929 0.2695 6.72e-06 6am8:A, 6am8:B, 6am8:C, 6am8:D, 6am9:A, 6am9:B, 6am9:C, 6am9:D, 6amh:A, 6amh:B, 6amh:C, 6amh:D, 6ami:A, 6ami:B, 6ami:C, 6ami:D, 6cut:A, 6cut:B, 6cut:C, 6cut:D, 6cuz:A, 6cuz:D, 5dw0:A, 5dw0:B, 5dw0:C, 5dw0:D, 5dw3:A, 5dw3:B, 5dw3:C, 5dw3:D, 5ixj:A, 5ixj:B, 5ixj:C, 7rnp:A, 7rnp:B, 7rof:A, 7rof:D, 5t6m:A, 5t6m:B, 5t6m:C, 5t6m:D, 1v8z:A, 1v8z:B, 1v8z:C, 1v8z:D, 5vm5:A, 5vm5:B, 5vm5:C, 5vm5:D, 1wdw:B, 1wdw:D, 1wdw:F, 1wdw:H, 1wdw:J, 1wdw:L
42 1pwh:A 327 145 0.1302 0.1254 0.2828 0.002 1pwh:B, 1pwh:C, 1pwh:D
43 2rhg:B 364 62 0.0635 0.0549 0.3226 0.009
44 7jmq:B 396 62 0.0635 0.0505 0.3226 0.010 1a50:B, 1a5a:B, 1a5b:B, 1a5s:B, 8b03:B, 8b05:B, 8b06:B, 8b08:B, 1beu:B, 1bks:B, 5bw6:B, 1c29:B, 6c73:B, 1c8v:B, 1c9d:B, 3cep:B, 5cgq:B, 2cle:B, 2clf:B, 2clh:B, 2cli:B, 2clk:B, 2cll:B, 2clm:B, 2clo:B, 1cw2:B, 1cx9:B, 6d0v:B, 2dh5:A, 6duc:B, 6dz4:B, 6dzo:B, 1fuy:B, 4hn4:B, 4hpj:B, 4hpx:B, 4ht3:B, 2j9x:B, 2j9y:B, 2j9z:B, 7jhw:B, 7jll:B, 7jqw:B, 7jtt:B, 7k0b:B, 1k3u:B, 7k5a:B, 1k7e:B, 1k7f:B, 1k7x:B, 1k8x:B, 1k8y:B, 1k8z:B, 7ka1:B, 7kbn:B, 1kfb:B, 1kfc:B, 1kfe:B, 1kfj:B, 1kfk:B, 7kh6:B, 7ki7:B, 4kkx:B, 7kmc:B, 7kq9:B, 7kqf:B, 7ku9:B, 7kwv:B, 7kxc:B, 7kyt:B, 7l03:B, 7l1h:B, 7l47:B, 7l4d:B, 7l5h:B, 7lev:B, 7lgx:B, 7lkl:B, 7lpf:B, 7lt4:B, 7ltp:B, 7lut:B, 7lv5:B, 7lvx:B, 7lx1:B, 7ly8:B, 7m2l:B, 7m3s:B, 7me8:B, 7mt4:B, 7mt5:B, 7mt6:B, 6o1h:B, 3pr2:B, 1qop:B, 1qoq:B, 2rh9:B, 1tjp:B, 2trs:B, 2tsy:B, 1ttp:B, 1ttq:B, 2tys:B, 1ubs:B, 6vfd:B, 6vnt:B, 1wbj:B, 6wdu:B, 2wsy:B, 4wx2:B, 6wx3:B, 6x0c:B, 6xe3:B, 6xin:B, 6xnc:B, 6xoy:B, 6xrh:B, 6xsy:B, 6xt0:B, 4xug:B, 4y6g:B, 4zqc:B
45 5kzm:B 395 64 0.0635 0.0506 0.3125 0.044
46 1f2d:A 341 126 0.0984 0.0909 0.2460 0.086 1f2d:B, 1f2d:C, 1f2d:D, 1j0c:A, 1j0c:B, 1j0c:C, 1j0c:D, 1j0d:A, 1j0d:B, 1j0d:C, 1j0d:D, 1j0e:A, 1j0e:B, 1j0e:C, 1j0e:D
47 5ey5:B 383 64 0.0698 0.0574 0.3438 0.10 5ey5:D
48 3kyc:B 548 133 0.0921 0.0529 0.2180 0.20 6cwz:D, 6xog:B, 6xoh:B, 1y8q:B, 1y8q:D, 1y8r:B, 1y8r:E
49 3r0x:A 438 72 0.0540 0.0388 0.2361 0.25
50 5ygr:B 365 115 0.1016 0.0877 0.2783 0.39
51 3ss7:X 437 139 0.0984 0.0709 0.2230 0.48 3ss9:X
52 3aex:A 351 49 0.0540 0.0484 0.3469 0.48 3aex:B, 3aey:A, 3aey:B, 1uim:A, 1uim:B, 1uin:A, 1uin:B, 1v7c:A, 1v7c:B, 1v7c:C, 1v7c:D
53 6xoi:B 403 59 0.0571 0.0447 0.3051 0.53
54 8d6z:I 215 57 0.0540 0.0791 0.2982 0.84 8d6z:B, 8d6z:F, 8d6z:D, 4hha:A, 4hih:A, 4hii:A, 4hij:C, 5wnb:M
55 3kyd:B 477 103 0.0730 0.0482 0.2233 0.85
56 6cwy:D 487 103 0.0730 0.0472 0.2233 0.86
57 1sbp:A 309 63 0.0698 0.0712 0.3492 0.88
58 5tci:H 406 61 0.0794 0.0616 0.4098 1.0 6dwe:B, 6dwe:H, 6dwe:F, 6dwe:D, 6e9p:B, 6e9p:D, 6e9p:F, 6e9p:H, 5ocw:B, 5ocw:D, 5ocw:F, 5ocw:H, 5ocw:J, 5ocw:L, 5ocw:N, 5ocw:P, 5ocw:R, 5ocw:T, 5ocw:V, 5ocw:X, 5tcg:B, 5tcg:H, 5tcg:F, 5tcg:D, 5tci:B, 5tci:F, 5tci:D, 5tcj:B, 5tcj:H, 5tcj:F, 5tcj:D, 6u6c:B, 6u6c:D, 6u6c:F, 6u6c:H, 6uap:B, 6uap:D, 6uap:F, 6uap:H, 6ub9:B, 6ub9:D, 6ub9:F, 6ub9:H, 6usa:B, 6usa:D, 6usa:F, 6usa:H
59 5ygr:D 388 51 0.0508 0.0412 0.3137 1.1 5ygr:A, 5ygr:C
60 7u7h:A 423 36 0.0603 0.0449 0.5278 1.6 7u7h:B
61 8u66:A 448 122 0.1016 0.0714 0.2623 2.7 8u66:B, 8u66:C, 8u66:D, 8u66:E, 8u66:F, 8u66:G, 8u66:H
62 4d9n:A 391 47 0.0476 0.0384 0.3191 2.9 4d9m:A, 4d9m:B, 4d9n:B
63 4d9k:A 366 47 0.0476 0.0410 0.3191 3.0 4d9k:B, 4d9k:C
64 1b4u:B 298 43 0.0444 0.0470 0.3256 6.2 1b4u:D, 1bou:B, 1bou:D
65 1ve5:A 308 101 0.0921 0.0942 0.2871 6.4 1ve5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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