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BioLiP
>protein
SKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIG
KDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHAD
NNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDI
TLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFV
TNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSD
RVAKYNQLIRIEEALGEKAPYNGRKEIKGQ

The query sequence (length=430) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6bfy:A 439 430 1.0000 0.9795 1.0000 0.0 6bfy:B, 6bfy:C, 6bfy:F, 6bfy:D, 6bfy:E, 6bfz:A, 6bfz:B, 6bfz:E, 6bfz:F, 6bfz:D, 6bfz:C, 6d3q:A, 6d3q:C, 6d3q:B, 6d3q:E, 6d3q:F, 6d3q:D, 1e9i:A, 1e9i:B, 1e9i:C, 1e9i:D, 2fym:A, 2fym:C, 2fym:D, 2fym:F, 3h8a:A, 3h8a:B, 3h8a:C, 3h8a:D, 6npf:A, 6npf:B, 6npf:C, 6npf:D, 6npf:F, 6npf:E, 5ohg:A, 5ohg:B, 5ohg:H, 5ohg:I
2 1iyx:A 431 427 0.6488 0.6473 0.6534 0.0 1iyx:B
3 4mks:A 400 421 0.5977 0.6425 0.6105 1.48e-180 4mks:B
4 5j04:A 424 423 0.6116 0.6203 0.6217 9.06e-180 5j04:B, 4rop:A
5 3uj2:A 423 424 0.6256 0.6359 0.6344 2.70e-179 3uj2:B, 3uj2:C, 3uj2:D, 3uj2:E, 3uj2:F, 3uj2:G, 3uj2:H
6 5bof:A 434 428 0.5860 0.5806 0.5888 1.38e-176 5boe:A, 5boe:B, 5bof:B
7 6nb2:B 424 420 0.5767 0.5849 0.5905 2.85e-175 6nb2:A, 6nbm:A, 6nbm:B
8 1w6t:B 430 430 0.5814 0.5814 0.5814 1.21e-171 1w6t:A
9 4z17:A 424 426 0.5791 0.5873 0.5845 7.84e-170 4yws:A, 4z17:B, 4z1y:A, 4z1y:B
10 3tqp:A 418 425 0.5698 0.5861 0.5765 7.70e-163 3tqp:B
11 2xsx:B 435 429 0.5535 0.5471 0.5548 1.07e-155 2xsx:A
12 7cll:C 426 422 0.5442 0.5493 0.5545 2.00e-149 7ckp:A, 7clk:A, 7cll:A, 7cll:B, 7cll:D, 7dlr:A, 7e4f:A, 7e51:A, 7e51:B, 7e51:C, 7e51:D, 7e51:E, 7e51:F, 7e51:G, 7e51:H, 6l7d:A
13 6o4n:A 422 420 0.5209 0.5308 0.5333 4.61e-149 6o4n:B, 8w21:A, 8w21:B, 8w21:C, 8w21:E, 8w21:G, 8w21:H
14 5eu9:C 436 430 0.5279 0.5206 0.5279 9.07e-148 2akm:A, 2akm:B, 2akz:A, 2akz:B, 5eu9:A, 5eu9:B, 5eu9:D, 5eu9:E, 5eu9:F, 5eu9:G, 5eu9:H, 5idz:A, 5idz:B, 7mbh:A, 7mbh:B, 5td9:A, 5td9:B, 1te6:A, 1te6:B, 5tij:A, 5tij:B, 3ucc:A, 3ucc:B, 3ucd:A, 3ucd:B, 3uje:A, 3uje:B, 3ujf:A, 3ujf:B, 3ujr:A, 3ujr:B, 3ujs:A, 3ujs:B, 4za0:A, 4za0:B, 4zcw:A, 4zcw:B
15 3b97:C 433 430 0.5233 0.5196 0.5233 2.14e-145 3b97:A, 3b97:B, 3b97:D, 2psn:A, 2psn:B, 2psn:C, 2psn:D
16 3qn3:A 415 413 0.5302 0.5494 0.5521 3.25e-145 3qn3:B, 3qn3:C, 3qn3:D
17 7vrd:A 439 434 0.5395 0.5285 0.5346 9.54e-142 7vrd:B, 7vrd:C, 7vrd:D
18 4yws:B 393 423 0.5349 0.5852 0.5437 1.76e-139
19 1pdz:A 433 432 0.5163 0.5127 0.5139 1.53e-137 8uel:A, 8uel:B
20 2xgz:A 437 431 0.5093 0.5011 0.5081 1.57e-134 2al1:A, 2al1:B, 2al2:A, 2al2:B, 1ebg:A, 1ebg:B, 1ebh:A, 1ebh:B, 1els:A, 4enl:A, 5enl:A, 6enl:A, 7enl:A, 1l8p:A, 1l8p:B, 1l8p:C, 1l8p:D, 1nel:A, 1one:A, 1one:B, 2one:A, 2one:B, 1p43:A, 1p43:B, 1p48:A, 1p48:B, 2xgz:B, 2xh0:A, 2xh0:B, 2xh0:C, 2xh0:D, 2xh2:A, 2xh2:D, 2xh2:B, 2xh2:C, 2xh4:A, 2xh4:B, 2xh4:C, 2xh4:D, 2xh7:A, 2xh7:B
21 3qtp:B 439 437 0.5163 0.5057 0.5080 7.35e-134 3qtp:A
22 4g7f:A 419 423 0.5070 0.5203 0.5154 2.84e-133
23 2ptx:A 431 429 0.5163 0.5151 0.5175 2.21e-132 1oep:A, 2pty:A, 2ptz:A, 2pu0:A, 2pu1:A
24 7ugh:A 436 426 0.4791 0.4725 0.4836 4.85e-131 7ugh:B
25 2ptw:A 406 421 0.5047 0.5345 0.5154 2.27e-130
26 7rhw:A 437 434 0.5186 0.5103 0.5138 2.37e-129 7rhv:A, 7rhv:B, 7rhw:B, 7ri0:A, 7ri0:B
27 1uaa:A 636 50 0.0395 0.0267 0.3400 1.1 1uaa:B
28 4xjn:A 395 133 0.0767 0.0835 0.2481 2.0 5wkn:A, 5wkn:B, 4xjn:B, 4xjn:C, 4xjn:D, 4xjn:E, 4xjn:F, 4xjn:G, 4xjn:H, 4xjn:I, 4xjn:J, 4xjn:K, 4xjn:L, 4xjn:M
29 4amv:A 608 56 0.0442 0.0312 0.3393 3.1 4amv:B, 4amv:C, 7dnr:A, 2j6h:A, 2j6h:B, 1jxa:A, 1jxa:B, 1moq:A, 1mor:A, 1mos:A, 3ooj:A, 3ooj:B, 3ooj:C, 3ooj:D, 3ooj:E, 3ooj:F, 3ooj:G, 3ooj:H, 2vf5:X, 1xff:A, 1xff:B, 1xfg:A, 1xfg:B
30 3i4k:A 370 99 0.0674 0.0784 0.2929 4.6 3i4k:B, 3i4k:C, 3i4k:D, 3i4k:E, 3i4k:F, 3i4k:G, 3i4k:H
31 3czk:A 618 89 0.0558 0.0388 0.2697 6.4 3czg:A, 3czl:A
32 4a4a:A 886 68 0.0465 0.0226 0.2941 7.2 7mfk:A, 7mfl:A, 2vc9:A, 2vca:A, 2vcb:A, 2vcc:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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