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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SKITYTFTDEAPALATYSLLPIVKAFAASAGIDVETSDISLAGRILANFADRLEADQRIEDDLARLAVLATSPDANIIKL
PNISASVPQLKGAIAELQGLGYKVPDFPEDPQTDEEKEVRARYAKILGSAVNPVLREGNSDRRAPAAVKAYARKHPHSMG
KWSMASRSHADYMRGGDFFSSEQSITMAKAGDVRIEFVGKDGKVEVKKQLSLQEGEVLDSMFMSCGKLRDFFEKTLQDCK
ETGVMWSLHVKATMMKISHPIVFGHAVSVYYKDVFDKWGQLFEELGVNPNNGISSVYDKIKSLPASQQEEILHDIHEVYS
HRPEMAMVDSVKGITNLHIPSDVIVDASMPAMIRNSGQMWGKDGKQKDTKAVMPESTYARIYQEMINFCKTNGAFDPTTM
GSVPNVGLMAQKAEEYGSHDKTFEMTADGTMRVVLADGSVLMQHKVETGDIWRACQTKDAPIRDWVKLAVTRARQSDTPA
IFWLDPERAHDRELRKKVELYLKDHDLTGLDISIMGYNEAIRVSMERLIRGKDTISVTGNVLRDYLTDLFPIMELGTSAK
MLSIVPLMAGGGMYETGAGGSAPKHVQQLVEENYLRWDSLGEFLALAVSLEETGIKTGNAKAKLLGKALDEATGKLLDNN
KSPSRKVGDIDNRGSHFYLAMYWAQALAAQNEDAELKAHFAPLAKALTEQEATIVAELNAVQGKPAEIGGYYRSNPELTS
KVMRPSATFNAAIDSLA

The query sequence (length=737) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6g3u:A 737 737 1.0000 1.0000 1.0000 0.0
2 5z16:B 739 738 0.6866 0.6847 0.6856 0.0 5z16:A
3 5kvu:A 738 736 0.6757 0.6748 0.6766 0.0 5kvu:B, 5kvu:C, 5kvu:D
4 4zda:A 735 733 0.6730 0.6748 0.6767 0.0 4zda:B, 4zda:C, 4zda:D, 4zda:E, 4zda:F
5 1itw:A 740 737 0.6635 0.6608 0.6635 0.0 1itw:B, 1itw:C, 1itw:D, 1j1w:A, 1j1w:B, 1j1w:C, 1j1w:D
6 2b0t:A 735 737 0.5984 0.6000 0.5984 0.0 3mbc:A, 3mbc:B
7 7y1u:A 723 732 0.5319 0.5422 0.5355 0.0
8 6wdz:D 102 85 0.0299 0.2157 0.2588 0.24 6wdz:A, 6wdz:G
9 6htq:x 341 114 0.0448 0.0968 0.2895 0.35
10 6yxa:A 536 134 0.0475 0.0653 0.2612 0.40 8acu:A, 8acu:B
11 3c0y:A 386 65 0.0271 0.0518 0.3077 0.66 3c0y:B, 3c0z:A, 3c0z:B, 3c10:A, 3c10:B, 3znr:A, 3znr:B, 3zns:A, 3zns:B
12 3c0z:C 359 65 0.0271 0.0557 0.3077 0.67 3c0y:C, 3c10:C, 3znr:C, 3zns:C
13 7lrn:B 250 87 0.0258 0.0760 0.2184 7.2 7lrn:A
14 6yeu:A 107 29 0.0122 0.0841 0.3103 7.8 6yig:A
15 8buz:A 890 44 0.0204 0.0169 0.3409 8.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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