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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SKIEQPRWASKDSAAGAASTPDEKIVLEFMDALTSNDAAKLIEYFAEDTMYQNMPLPPAYGRDAVEQTLAGLFTVMSYDA
VETFHIGSSNGLVYTERVDVLRALPTGKSYNVSVLGVFQLTEGKITGWRDYFDLREFEEAVDLPLRG

The query sequence (length=147) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ck6:A 154 147 1.0000 0.9545 1.0000 2.44e-108 5ck6:B, 5clk:A, 5clk:B, 5gkw:A, 1nu3:A, 1nu3:B, 1nww:A, 4xbt:A, 4xbt:C, 4xby:D, 4xby:B, 4xdv:C, 4xdv:D, 4xdv:A, 4xdv:B, 7xee:A, 7xee:B, 7xef:A, 7xef:B, 7xef:C, 7xef:D, 5yao:A, 5yng:A, 5yng:B, 5yqt:D
2 4r9k:C 160 145 0.9116 0.8375 0.9241 6.78e-99 5jpu:A, 5jpu:B, 4r9k:A, 4r9k:B, 4r9l:A, 4r9l:B
3 5aih:A 125 120 0.2857 0.3360 0.3500 6.07e-16 5aih:B, 5aii:F
4 5aig:A 124 120 0.2517 0.2984 0.3083 1.71e-14 5aig:B
5 2bng:B 133 116 0.2313 0.2556 0.2931 1.33e-08
6 5hgr:A 315 68 0.1429 0.0667 0.3088 0.045 5hgr:B
7 7qd1:A 311 68 0.1429 0.0675 0.3088 0.074 7qcz:A, 7qd0:A, 7qd1:C, 7qd2:A, 7qd2:C
8 6pq1:A 320 68 0.1497 0.0688 0.3235 0.14
9 5ui2:A 316 38 0.1088 0.0506 0.4211 0.22 5ui2:B
10 7ekr:B 309 40 0.1156 0.0550 0.4250 0.61 7ekr:A
11 2a92:C 318 37 0.0884 0.0409 0.3514 0.88 2a92:A, 2a92:B, 2a92:D, 2a94:A, 2aa3:A, 2aa3:B, 2aa3:C, 2aa3:D, 4b7u:A, 5hru:A, 5hru:B, 5hto:A, 5hto:B, 5hto:D, 5hto:E, 1oc4:A, 1oc4:B, 4plz:A, 1t24:A, 1t25:A, 1t26:A, 1t2c:A, 1t2d:A, 6txr:A, 6txr:B, 6txr:C, 6txr:D, 3zh2:A, 3zh2:B, 3zh2:C, 3zh2:D
12 7zsg:1 314 40 0.1088 0.0510 0.4000 1.2 3mg1:A, 3mg1:B, 3mg2:A, 3mg2:B, 3mg3:A, 3mg3:B, 7sc9:BH, 7sc9:CQ, 7sc9:DI, 7sc9:EA, 7scb:BH, 7scc:AS, 7scc:BP, 6t6k:A, 6t6m:A, 6t6o:A, 8to2:B, 8tpj:B, 5tuw:A, 5tuw:B, 5tuw:C, 5tuw:D, 5tuw:E, 5tuw:F, 5tux:A, 5tv0:A, 4xb4:A, 4xb4:B, 4xb5:A, 7zsf:A, 7zsh:1, 7zsi:1, 7zsj:1, 7zxv:A
13 5itv:A 255 58 0.1293 0.0745 0.3276 2.0 5itv:B, 5itv:C
14 8xoo:O 572 88 0.1769 0.0455 0.2955 2.2
15 8xon:O 593 88 0.1769 0.0438 0.2955 2.5 8xon:S, 8xon:R, 8xon:Q, 8xon:P, 8xon:T, 8xoo:R, 8xoo:Q, 8xoo:P, 8xoo:T, 8xoo:S
16 5itv:D 227 58 0.1293 0.0837 0.3276 2.5
17 1bag:A 425 30 0.0748 0.0259 0.3667 3.8 3dc0:A, 1ua7:A
18 8dqw:A 522 47 0.1088 0.0307 0.3404 4.0 8fs3:A, 8fs5:A, 8fs6:A, 8fs7:A, 8fs8:A, 7sgz:A, 7st9:A, 7stb:A
19 1guz:A 305 36 0.0884 0.0426 0.3611 4.0 1guz:B, 1guz:C, 1guz:D
20 1gv0:A 301 36 0.0884 0.0432 0.3611 4.6 1gv0:B
21 8uu5:i 127 49 0.1088 0.1260 0.3265 6.6 7nhn:j, 8uu4:i, 8uu6:i, 8uu7:i, 8uu8:i, 8uu9:i
22 4plf:B 330 37 0.0816 0.0364 0.3243 8.3 4plc:A, 4plc:B, 4plc:C, 4plc:D, 4plf:A, 4plg:A, 4plg:B, 6vdj:A
23 5mmd:E 221 29 0.0952 0.0633 0.4828 8.5 5mmd:F
24 7pub:Cj 227 67 0.1293 0.0837 0.2836 8.9 6hiv:Cj, 6hiw:Cj, 6hiy:Cj, 7pua:Cj, 6sga:Cj, 6sgb:Cj
25 4plt:B 319 37 0.0748 0.0345 0.2973 9.2 4plh:A, 4plh:B, 4plh:C, 4plh:D, 4plt:A, 4plt:C, 4plt:D, 4plv:A, 4plv:B, 4plv:C, 4plv:D, 4plw:A, 4plw:B, 4plw:C, 4plw:D, 4ply:B, 4ply:A, 4ply:C, 4ply:D, 4ply:F, 4ply:E, 4ply:G, 4ply:H
26 8pyh:B 319 50 0.1088 0.0502 0.3200 9.7 8pyh:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218