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BioLiP
>protein
SKGRKLNYSVQDPIANYEAPITSGYKWSDDQIDEFFAGLLGQ

The query sequence (length=42) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7suk:5 296 42 1.0000 0.1419 1.0000 1.49e-25 7ajt:JK, 7d63:RY, 6lqp:RY, 6lqq:RY, 6lqr:RY, 6lqu:RY, 6lqv:RY, 6zqb:JK, 6zqc:JK
2 6rxu:CZ 44 42 0.4286 0.4091 0.4286 1.48e-06 6rxv:CZ, 6rxz:CZ
3 7mq8:NN 42 42 0.3810 0.3810 0.3810 0.002 7mq9:NN
4 4xo4:A 870 19 0.1905 0.0092 0.4211 1.6 3b2p:A, 3b2x:A, 3b34:A, 3b37:A, 3b3b:A, 2dq6:A, 2dqm:A, 6g8b:A, 2hpo:A, 2hpt:A, 3ked:A, 5mfr:A, 5mfs:A, 5mft:A, 3puu:A, 4q4e:A, 4q4i:A, 3qjx:A, 4xmt:A, 4xmu:A, 4xmv:A, 4xmw:A, 4xmx:A, 4xmz:A, 4xn1:A, 4xn2:A, 4xn4:A, 4xn5:A, 4xn7:A, 4xn8:A, 4xn9:A, 4xna:A, 4xnb:A, 4xnd:A, 4xo3:A, 4xo5:A, 5yo1:A, 5yq1:A, 5yq2:A, 5yqb:A, 2zxg:A
5 5ljz:A 410 32 0.2857 0.0293 0.3750 2.1 5lk1:A
6 5uqd:A 324 16 0.1667 0.0216 0.4375 2.8
7 7cll:C 426 21 0.2381 0.0235 0.4762 2.9 7ckp:A, 7clk:A, 7cll:A, 7cll:B, 7cll:D, 7dlr:A, 7e4f:A, 7e51:A, 7e51:B, 7e51:C, 7e51:D, 7e51:E, 7e51:F, 7e51:G, 7e51:H, 6l7d:A
8 7v4w:A 217 25 0.2619 0.0507 0.4400 4.8 7v64:A, 7v7k:A, 7v8q:A, 7v8q:C, 7v8q:E, 7vac:A, 7vac:C, 7vac:E, 7vaz:C, 7vaz:A, 7vaz:F, 1y0l:L, 1y0l:A, 1y0l:C, 1y18:L, 1y18:A, 1y18:C, 1y18:E
9 7oik:A 4426 30 0.2857 0.0027 0.4000 5.0 7oim:A, 6tax:A, 6tay:A
10 5ljx:A 382 23 0.2381 0.0262 0.4348 7.4 5lk2:A, 5lk3:A
11 6m0a:B 256 12 0.1905 0.0312 0.6667 7.8 6m0a:A, 6m0a:C, 6m0a:D
12 8xfc:D 517 28 0.1905 0.0155 0.2857 9.5 8wdb:D
13 6ouv:A 595 38 0.3095 0.0218 0.3421 10.0 2o1x:A, 2o1x:B, 6ouv:B, 8v9i:A, 8v9i:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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