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BioLiP
>protein
SKFQEIETNLKKLPKLETGFDALANKKKKKNVLPSNDWFTLPKPDDNMRREVQRDLLLIKHRAALDPKRHYKKQRWEVPE
RFAIGTIIEDKMNRKERKSTILETLMGDEASNKYFKRKYNEIQEKSTSGRKAHYKKMKEMRKKR

The query sequence (length=144) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7d5s:5J 151 151 1.0000 0.9536 0.9536 4.25e-101 7aju:JM, 7d4i:5J, 7d5t:5J, 7d63:5J, 6ke6:5J, 6lqp:5J, 6lqq:5J, 6lqr:5J, 6lqs:5J, 6lqt:5J, 6lqu:5J, 6lqv:5J, 6zqd:JM, 6zqe:JM
2 7ajt:JM 135 144 0.9375 1.0000 0.9375 1.84e-94 7suk:SQ, 5wlc:SQ, 6zqa:JM, 6zqb:JM, 6zqc:JM
3 6rxt:CT 131 118 0.3264 0.3588 0.3983 1.66e-17 5oql:k, 6rxu:CT, 6rxv:CT, 6rxx:CT, 6rxy:CT, 6rxz:CT
4 7mqa:SQ 156 140 0.3403 0.3141 0.3500 7.62e-16
5 7mq8:SQ 187 126 0.2986 0.2299 0.3413 9.24e-15 7mq9:SQ
6 3thw:B 860 87 0.1667 0.0279 0.2759 0.069 8oma:B, 8omo:B, 8omq:B, 3thx:B, 3thy:B, 3thz:B
7 8olx:B 836 87 0.1667 0.0287 0.2759 0.069 8om5:B, 8om9:B
8 1utb:B 227 64 0.1181 0.0749 0.2656 0.49 1utb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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