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BioLiP
>protein
SKEIPTPYMWSYQPQMGLAAGASQDYSSRMNWLSAGPHMIGRVNGIRATRNQILLEQAALTSTPRSQLNPPNWPAAQVYQ
ENPAPTTVLLPRDAEAEVQMTNSGAQLAGRSSFTPRQAYLTLQSSSSQPRSGGIGTLQFVEEFVPSVYFNPFSGAPGLYP
DDFIPNYDAVSESVDGYD

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6z7n:U 179 179 1.0000 0.9944 0.9944 1.71e-128 6z7n:T
2 7tau:V 188 187 0.8596 0.8138 0.8182 8.74e-110
3 6b1t:O 180 180 0.8315 0.8222 0.8222 4.66e-108
4 7rd1:S 175 178 0.8371 0.8514 0.8371 2.95e-107
5 7s78:U 165 179 0.6629 0.7152 0.6592 5.22e-76
6 1bx0:A 296 46 0.0730 0.0439 0.2826 5.8 1bx1:A, 1fnb:A, 1fnc:A, 1fnd:A, 1frn:A, 1frq:A
7 1jpm:A 359 34 0.0787 0.0390 0.4118 7.3 1jpm:B, 1jpm:C, 1jpm:D, 1tkk:A, 1tkk:B, 1tkk:C, 1tkk:D, 1tkk:E, 1tkk:F, 1tkk:G, 1tkk:H
8 7qix:G 261 55 0.0730 0.0498 0.2364 7.3 7qiz:w

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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