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BioLiP
>protein
SKDPTTFPLGCSPDITTPKKGLSMELYSYDFRKKGSYPCWDAAYLDPNYPRTGYKSHRLLAKVDGVTGNINFYYHATKGC
TPQLGHLPASYNYPKPLTMTNFTMLLYGYFRPKVTGFHTFTISADDLLFVNFGAGNAFDCCRRDSSADHFGNYQAYAIWG
SKTAKDELTVHLDAGVYYPIRLFYNNREYDGALSFTFKTESNENTVSDFSEYFFSLDDTEEGCPGL

The query sequence (length=226) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6y9j:A 231 226 0.9912 0.9697 0.9912 2.55e-169 4a3x:A, 4af9:A, 4afa:A, 4afb:A, 4afc:A, 4asl:A, 4d3w:A
2 4coy:A 232 224 0.7876 0.7672 0.7946 5.59e-135 4cou:A, 4cov:A, 4cow:A, 4coz:A
3 6y98:A 225 218 0.4469 0.4489 0.4633 1.02e-61 4cp0:A, 4cp1:A, 4cp2:A
4 4gq7:A 220 216 0.2522 0.2591 0.2639 5.06e-12 4lhk:A, 4lhk:B
5 2xjp:A 258 231 0.2788 0.2442 0.2727 7.76e-12 4lhn:A, 2xjr:A, 2xjs:A, 2xjt:A, 2xju:A, 2xjv:A
6 6hos:A 213 190 0.2478 0.2629 0.2947 8.69e-11 6hos:B
7 5a3l:A 209 183 0.2257 0.2440 0.2787 1.24e-10 5a3l:B, 5a3l:C, 5a3l:D, 5a3m:A, 5a3m:B, 5a3m:C, 5a3m:D
8 3ijh:B 221 89 0.1106 0.1131 0.2809 1.8 3ijh:D, 3ijs:B, 3ijs:D, 3ijy:B, 3ijy:D, 3ikc:B, 3ikc:D
9 3oke:B 217 68 0.0929 0.0968 0.3088 5.3 3bpc:B, 4hgw:B, 2r1x:B, 2r1y:B, 2r2b:B, 2r2h:B, 7t0f:H
10 7k84:A 793 42 0.0619 0.0177 0.3333 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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