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BioLiP
>protein
SKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELH
PDDRSKIT

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1hko:A 104 88 1.0000 0.8462 1.0000 4.73e-62 1aqa:A, 1cyo:A, 1ehb:A, 1es1:A, 1f03:A, 1f04:A, 1i5u:A, 1ib7:A, 1j0q:A, 1jex:A, 1lqx:A, 1lr6:A, 1m20:A, 1m2i:A, 1m2m:A, 1m59:A, 1nx7:A, 1sh4:A, 1u9m:A, 1u9m:B, 1u9m:C, 1u9m:D, 1u9m:E, 1u9m:F, 1u9u:A, 3x32:A, 3x33:A, 3x34:A, 3x35:A
2 2i96:A 108 86 0.9091 0.7407 0.9302 5.20e-57 4hin:A, 4hin:B, 4hin:C, 4hin:D, 2m33:A
3 1aw3:A 94 87 0.9091 0.8511 0.9195 7.05e-56 1axx:A, 2axx:A, 1b5a:A, 1b5b:A, 1bfx:A, 1blv:A, 1do9:A, 1mny:A
4 3ozz:B 82 82 0.7955 0.8537 0.8537 1.07e-50
5 2i89:A 90 81 0.6705 0.6556 0.7284 1.03e-42 2i89:B, 2i89:C, 2i89:D, 1icc:A, 1icc:B, 1icc:D, 1lj0:A, 1lj0:B, 1lj0:C, 1lj0:D, 3mus:B
6 1awp:A 86 81 0.5682 0.5814 0.6173 3.16e-36 1awp:B, 1b5m:A, 1eue:A, 1eue:B, 4hil:A, 4hil:B, 1icc:C, 3mus:A
7 3ner:B 91 81 0.5795 0.5604 0.6296 1.87e-35 3ner:A
8 2ibj:A 86 85 0.5795 0.5930 0.6000 3.41e-33
9 4b8n:B 90 74 0.3523 0.3444 0.4189 1.53e-13 4b8n:A, 4b8n:C, 4b8n:D
10 3lf5:A 87 72 0.2841 0.2874 0.3472 2.90e-12 3lf5:B
11 1cxy:A 81 80 0.2955 0.3210 0.3250 4.61e-12
12 1kbi:A 504 51 0.2614 0.0456 0.4510 1.67e-11 1fcb:A, 1fcb:B, 1kbi:B, 1kbj:A, 1kbj:B, 3ks0:A, 3ks0:B, 1lco:A, 1lco:B, 1ldc:A, 1ltd:A, 1ltd:B, 2oz0:A, 2oz0:B, 1qcw:A, 1qcw:B, 1sze:A, 1sze:B, 1szf:A, 1szf:B, 1szg:A, 1szg:B
13 1x3x:A 82 66 0.2955 0.3171 0.3939 1.19e-10 1x3x:B
14 8tgb:A 108 76 0.2614 0.2130 0.3026 2.67e-10 8tgb:B
15 7bwh:A 88 84 0.2955 0.2955 0.3095 3.44e-10
16 1sox:A 463 81 0.3295 0.0626 0.3580 3.86e-07 2a9a:A, 2a9a:B, 2a9b:A, 2a9c:A, 2a9c:B, 2a9d:A, 2a9d:B, 3hbp:A, 3hbq:A, 1sox:B
17 1mj4:A 79 73 0.2727 0.3038 0.3288 4.03e-06
18 1k6m:A 432 48 0.1364 0.0278 0.2500 4.8 1c7z:A, 1c7z:B, 1c80:A, 1c80:B, 1c81:A, 1fbt:A, 1fbt:B, 1k6m:B, 1tip:A, 1tip:B
19 2d2c:D 168 24 0.1250 0.0655 0.4583 4.8 2d2c:Q, 2e74:D, 2e75:D, 2e76:D, 4h0l:D, 4h13:D, 4i7z:D, 4pv1:D, 1vf5:D, 1vf5:Q
20 4cc5:A 308 48 0.1818 0.0519 0.3333 5.1 4cc6:A, 5fpo:A, 5fpr:A
21 5lvf:A 142 24 0.1250 0.0775 0.4583 5.3 2l0i:A, 5m9d:A
22 8dyu:A 2562 29 0.1250 0.0043 0.3793 7.1 8dyv:A
23 8fcy:A 2864 29 0.1250 0.0038 0.3793 7.5 8fd6:A, 8fdt:A
24 8pqw:A 2892 29 0.1250 0.0038 0.3793 7.8 8pqy:A, 8pqz:A, 8pqz:J
25 5nug:A 2920 29 0.1250 0.0038 0.3793 8.0 5nug:B
26 7z8g:A 3047 29 0.1250 0.0036 0.3793 8.6 8fdu:A, 7z8l:f
27 3t58:B 504 32 0.1136 0.0198 0.3125 9.1 4p2l:A, 4p2l:B, 3t58:A, 3t58:C, 3t58:D, 3t59:A, 3t59:B, 3t59:C, 3t59:D
28 1p5j:A 319 27 0.1250 0.0345 0.4074 9.7
29 8ptk:f 4502 29 0.1250 0.0024 0.3793 9.8 8ptk:e

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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