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BioLiP
>protein
SKAMYEAKERYAKKKMQENTKIDTLTDEQHDALAQLCAFRHKFHSNKDSLFLSESAFSMQSDENSKLREVGLPTIEWSFY
DNSHIPDDSFREWFNFANYSELSETIGLELDLDDDETYELVYDELYTEAMGEYEELNQDIEKYLRRIDEEHGTQYC

The query sequence (length=156) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6nmc:B 156 156 1.0000 1.0000 1.0000 3.89e-115 6nmd:B
2 8fmw:AC 221 58 0.1090 0.0769 0.2931 0.098
3 8om5:A 828 49 0.0833 0.0157 0.2653 0.94 8omo:A
4 8ag6:A 896 49 0.0833 0.0145 0.2653 1.1 2o8b:A, 2o8c:A, 2o8d:A, 2o8e:A, 2o8f:A, 8olx:A, 8om9:A, 8oma:A, 8omq:A, 3thw:A, 3thx:A, 3thy:A, 3thz:A
5 2wq5:A 119 39 0.0833 0.1092 0.3333 1.4 1poa:A, 1pob:A, 1pob:B
6 2rd4:B 119 39 0.0833 0.1092 0.3333 1.5 1s6b:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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