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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SKAASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDYVHGDALQKAAKAGLLALSALTFAG
LCYFNYHDVGICKAVAMLWKL

The query sequence (length=101) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3abv:D 102 101 0.9604 0.9510 0.9604 1.11e-66 3ae1:D, 3ae2:D, 3ae3:D, 3ae4:D, 3ae5:D, 3ae6:D, 3ae7:D, 3ae8:D, 3ae9:D, 3aea:D, 3aeb:D, 3aec:D, 3aed:D, 3aee:D, 3aef:D, 3aeg:D, 8gs8:D, 3sfd:D, 3sfe:D, 4ytp:D, 4yxd:D, 1zoy:D, 1zp0:D
2 2h89:D 102 101 0.8020 0.7941 0.8020 1.80e-45 2fbw:D, 2fbw:Q, 2h88:D, 2h88:Q, 6myo:D, 6myp:D, 6myq:D, 6myr:D, 6mys:D, 6myt:D, 6myu:D, 2wqy:D, 2wqy:Q, 1yq3:D, 1yq4:D
3 5c2t:D 129 95 0.4356 0.3411 0.4632 3.36e-20 5c2t:H, 5c3j:D, 5c3j:H, 3vr8:D, 3vr8:H, 3vr9:D, 3vr9:H, 3vra:D, 3vra:H, 3vrb:D, 3vrb:H, 4ysx:D, 4ysx:H, 4ysy:D, 4ysy:H, 4ysz:D, 4ysz:H, 4yt0:D, 4yt0:H, 4ytm:D, 4ytm:H, 4ytn:D, 4ytn:H
4 8wbd:B 330 36 0.1287 0.0394 0.3611 0.81 8wbd:C
5 8wbd:b 352 36 0.1287 0.0369 0.3611 0.83
6 8ci0:AAA 666 17 0.0891 0.0135 0.5294 4.5 8ci0:BBB, 8ci0:CCC, 1itz:A, 1itz:B, 1itz:C
7 5nd5:A 669 17 0.0891 0.0135 0.5294 4.8 5nd5:B
8 4v6w:AW 129 33 0.0990 0.0775 0.3030 6.2 6xu6:AW, 6xu7:AW, 6xu8:AW
9 6g79:S 262 26 0.0990 0.0382 0.3846 6.8
10 3fge:A 198 37 0.1188 0.0606 0.3243 9.1
11 7anc:B 314 41 0.1188 0.0382 0.2927 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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