Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SKAASLHWTSERAVSALLLGLLPAAYLYPGPAVDYSLAAALTLHGHWGLGQVITDYVHGDTPIKVANTGLYVLSAITFTG
LCYFNYYDVGICKAVAMLWSI

The query sequence (length=101) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2h89:D 102 101 1.0000 0.9902 1.0000 8.05e-70 2fbw:D, 2fbw:Q, 2h88:D, 2h88:Q, 6myo:D, 6myp:D, 6myq:D, 6myr:D, 6mys:D, 6myt:D, 6myu:D, 2wqy:D, 2wqy:Q, 1yq3:D, 1yq4:D
2 3abv:D 102 101 0.7723 0.7647 0.7723 3.47e-46 3ae1:D, 3ae2:D, 3ae3:D, 3ae4:D, 3ae5:D, 3ae6:D, 3ae7:D, 3ae8:D, 3ae9:D, 3aea:D, 3aeb:D, 3aec:D, 3aed:D, 3aee:D, 3aef:D, 3aeg:D, 8gs8:D, 3sfd:D, 3sfe:D, 4ytp:D, 4yxd:D, 1zoy:D, 1zp0:D
3 5c2t:D 129 95 0.4059 0.3178 0.4316 2.24e-19 5c2t:H, 5c3j:D, 5c3j:H, 3vr8:D, 3vr8:H, 3vr9:D, 3vr9:H, 3vra:D, 3vra:H, 3vrb:D, 3vrb:H, 4ysx:D, 4ysx:H, 4ysy:D, 4ysy:H, 4ysz:D, 4ysz:H, 4yt0:D, 4yt0:H, 4ytm:D, 4ytm:H, 4ytn:D, 4ytn:H
4 8q7h:A 1403 46 0.1386 0.0100 0.3043 1.2
5 4ivk:A 404 22 0.0990 0.0248 0.4545 1.3
6 7anc:B 314 35 0.1089 0.0350 0.3143 2.2
7 7cxt:A 348 35 0.1089 0.0316 0.3143 2.3 7anc:A, 7cxt:B, 7m13:A, 7m13:B
8 6sjv:A 529 20 0.1188 0.0227 0.6000 2.4 6sqc:A
9 3x17:B 548 95 0.2772 0.0511 0.2947 2.5 3x17:A
10 8ci0:AAA 666 30 0.1386 0.0210 0.4667 2.6 8ci0:BBB, 8ci0:CCC, 1itz:A, 1itz:B, 1itz:C
11 5nd5:A 669 17 0.0990 0.0149 0.5882 3.5 5nd5:B
12 6g79:S 262 42 0.1584 0.0611 0.3810 4.0
13 5v54:B 383 42 0.1584 0.0418 0.3810 4.9 7c61:A, 4iaq:A, 4iar:A, 5v54:A
14 5aj4:BF 250 53 0.1485 0.0600 0.2830 6.9 4ce4:F, 6gaw:BF, 6gb2:BF, 7nqh:BF, 7nql:BF, 7nsh:BF, 7nsi:BF, 7nsj:BF, 8oin:BN, 8oiq:BN, 4v19:F, 6ydp:BF, 6ydw:BF
15 6gos:D 396 21 0.0990 0.0253 0.4762 9.1 6grg:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218