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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SIYTLGIDVGSTASKCIILKDGKEIVAKSLVAVGTGTSGPARSISEVLENAHMKKEDMAFTLATGYGRNSLEGIADKQMS
ELSCHAMGASFIWPNVHTVIDIGGQDVKVIHVENGTMTNFQMNDKCAAGTGRFLDVMANILEVKVSDLAELGAKSTKRVA
ISSTCTVFAESEVISQLSKGTDKIDIIAGIHRSVASRVIGLANRVGIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPL
AQYNGALGAALYAYKKAAK

The query sequence (length=259) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1hux:A 259 259 1.0000 1.0000 1.0000 0.0 1hux:B
2 4eht:A 268 257 0.5367 0.5187 0.5409 4.15e-93 4eht:B, 4ehu:A, 4ehu:B, 4eia:A
3 7yyl:E 243 249 0.3552 0.3786 0.3695 5.68e-44 7yyl:F, 7yyl:G, 7yyl:H, 7yzm:G, 7yzm:H, 7yzm:E, 7yzm:F, 7yzq:E, 7yzq:F, 7yzq:G, 7yzq:H
4 4pxl:A 486 105 0.1236 0.0658 0.3048 0.53 4pxl:B
5 4hro:B 88 61 0.0734 0.2159 0.3115 2.6 4hro:A
6 7e0l:A 491 34 0.0579 0.0305 0.4412 4.4 7e0l:B, 7e0l:K, 7e0l:M, 7wsx:A, 7wsx:B
7 1dgj:A 906 64 0.0656 0.0188 0.2656 5.4
8 5brp:A 555 67 0.0849 0.0396 0.3284 7.1 5brp:B, 5brp:C, 5brp:D, 5brq:A, 5brq:B, 5brq:C, 5brq:D
9 8rf0:A 2780 69 0.0772 0.0072 0.2899 8.2 8rfe:A, 8rfg:A
10 2aa9:A 427 118 0.1120 0.0679 0.2458 9.7 2aay:A, 3fjx:A, 3fjz:A, 3fk0:A, 3fk1:A, 1g6s:A, 1g6t:A, 1mi4:A, 2pq9:A, 1q36:A, 2qfq:A, 2qfs:A, 2qft:A, 2qfu:A, 1x8r:A, 1x8t:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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