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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SIYQGGNKLNEDDFRSHVYSLCQLDNVGVLLGAGASVGCGGKTMKDVWKSFKQNYPELLGALIDKYLLVSQIDSDNNLVN
VELLIDEATKFLSVAKTRRCEDEEEEFRKILSSLYKEVTKAALLTGEQFREKNQGKKDAFKYHKELISKLISNRQPGQSA
PAIFTTNYDLALEWAAEDLGIQLFNGFSGLHTRQFYPQNFDLAFRNVNAHYHAYLYKLHGSLTWYQNDSLTVNEVSASQA
YDEYINDIINKDDFYRGQHLIYPGANKYSHTIGFVYGEMFRRFGEFISKPQTALFINGFGFGDYHINRIILGALLNPSFH
VVIYYPELKEAITKVSKGGGSEAEKAIVTLKNMAFNQVTVVGGGSKAYFNSFVEHLPYPVNIVDELVEAIANLS

The query sequence (length=394) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8j4u:B 401 400 1.0000 0.9825 0.9850 0.0 8j4u:A, 8j4u:C, 8j4u:D, 8j4u:E, 8j4u:F, 8j4u:G, 8j4u:H, 8j4u:I, 8j4u:J, 8j4u:K, 8j4u:L, 8su9:A, 8su9:B, 8su9:C, 8su9:D, 8su9:E, 8su9:F, 8su9:G, 8su9:H, 8su9:I, 8su9:J, 8su9:K, 8su9:L, 8sub:A, 8sub:B, 8sub:C, 8sub:D, 8sub:E, 8sub:F, 8sub:G, 8sub:H, 8sub:I, 8sub:J, 8sub:K, 8sub:L, 8suw:A, 8suw:B, 8suw:C, 8suw:D, 8suw:E, 8suw:F, 8suw:G, 8suw:H, 8suw:I, 8suw:J, 8suw:K, 8suw:L, 8sxx:A, 8sxx:B, 8sxx:C, 8sxx:D, 8sxx:E, 8sxx:F, 8sxx:G, 8sxx:H, 8sxx:I, 8sxx:J, 8sxx:K, 8sxx:L, 8uae:A, 8uae:B, 8uae:C, 8uae:D, 8uae:E, 8uae:F, 8uae:G, 8uae:H, 8uae:I, 8uae:J, 8uae:K, 8uae:L, 8uaf:A, 8uaf:B, 8uaf:C, 8uaf:D, 8uaf:E, 8uaf:F, 8uaf:G, 8uaf:H, 8uaf:I, 8uaf:J, 8uaf:K, 8uaf:L
2 7ajt:UR 482 87 0.0609 0.0498 0.2759 0.61 7aju:UR, 7d4i:B8, 7d5s:B8, 7d5t:B8, 7d63:B8, 6ke6:B8, 6lqp:B8, 6lqq:B8, 6lqr:B8, 6lqs:B8, 6lqt:B8, 6lqu:B8, 6lqv:B8, 6nd4:S, 7suk:LS, 5wlc:LS, 6zqa:UR, 6zqb:UR, 6zqc:UR, 6zqd:UR
3 8aaf:q 191 75 0.0533 0.1099 0.2800 0.89 8agt:q, 8agu:q, 8agv:q, 8agw:q, 8agx:q, 8agz:q, 5apn:H, 5apo:H, 7azy:e, 7b7d:LK, 8bip:LH, 8bjq:LH, 8bn3:L9, 8bqd:AD, 8bqx:AD, 7bt6:H, 7btb:H, 8ccs:LL, 8cdl:LL, 8cdr:LL, 8ceh:LL, 8cf5:LL, 8cg8:LL, 8cgn:LL, 8civ:LL, 8cku:LL, 8cmj:LL, 5dat:L9, 5dat:l9, 5dc3:L9, 5dc3:l9, 5dge:L9, 5dge:l9, 5dgf:L9, 5dgf:l9, 5dgv:L9, 5dgv:l9, 6elz:H, 6em1:H, 6em5:H, 8eub:AH, 8evp:AH, 8evq:AH, 8evr:AH, 8evs:AH, 8evt:AH, 8ewb:AH, 8ewc:AH, 5fci:L9, 5fci:l9, 5fcj:L9, 5fcj:l9, 6ft6:H, 5gak:L, 6gq1:H, 6gqb:H, 6gqv:H, 5h4p:H, 6hd7:L, 8hfr:Ib, 6hhq:q, 6hhq:CK, 5i4l:L9, 5i4l:l9, 6i7o:AD, 6i7o:XD, 3j16:F, 3j6x:L9, 3j6y:L9, 3j77:L9, 3j78:L9, 3jct:H, 5jcs:H, 5juo:M, 5jup:M, 5jus:M, 5jut:M, 5juu:M, 8k2d:LH, 8k82:LH, 5lyb:L9, 5lyb:l9, 5m1j:H5, 6m62:H, 5mc6:AD, 5mei:q, 5mei:CK, 7mpi:AH, 7mpj:AH, 6n8j:H, 6n8k:H, 6n8l:H, 6n8m:K, 6n8n:K, 6n8o:K, 7n8b:AH, 7nac:H, 5ndg:L9, 5ndg:l9, 5ndv:L9, 5ndv:l9, 5ndw:L9, 5ndw:l9, 7nrc:LK, 7nrd:LK, 5obm:L9, 5obm:l9, 7of1:H, 7oh3:H, 7ohp:H, 7ohq:H, 7ohr:H, 7oht:H, 7ohu:H, 7ohv:H, 7ohw:H, 7ohy:H, 6oig:H, 5on6:q, 5on6:CK, 7osa:uL6, 7osm:uL6, 8p8m:LM, 8p8n:LM, 8p8u:LM, 8pfr:LM, 6q8y:AD, 6qik:F, 6qt0:F, 6qtz:F, 7r7a:H, 6r84:7, 6r86:7, 6r87:7, 6ri5:F, 7rr5:LH, 6rzz:F, 6s05:F, 6s47:AK, 6snt:o, 6sv4:AD, 6sv4:XD, 6sv4:zD, 6t4q:LH, 5t62:K, 5t6r:K, 6t7i:LH, 6t7t:LH, 6t83:Hy, 6t83:Ka, 5tbw:q, 5tbw:CK, 6tb3:AD, 5tga:L9, 5tga:l9, 5tgm:L9, 5tgm:l9, 6tnu:AD, 7too:AL09, 7top:AL09, 7u0h:H, 4u3m:L9, 4u3m:l9, 4u3n:L9, 4u3n:l9, 4u3u:L9, 4u3u:l9, 4u4n:L9, 4u4n:l9, 4u4o:L9, 4u4o:l9, 4u4q:L9, 4u4q:l9, 4u4r:L9, 4u4r:l9, 4u4u:L9, 4u4u:l9, 4u4y:L9, 4u4y:l9, 4u4z:L9, 4u4z:l9, 4u50:L9, 4u50:l9, 4u51:L9, 4u51:l9, 4u52:L9, 4u52:l9, 4u53:L9, 4u53:l9, 4u55:L9, 4u55:l9, 4u56:L9, 4u56:l9, 4u6f:L9, 4u6f:l9, 7ug6:H, 7uoo:H, 7uqb:H, 7uqz:H, 7v08:H, 4v4b:BH, 4v6i:BF, 4v7h:BH, 4v7r:BI, 4v7r:DI, 4v88:BH, 4v88:DH, 4v8t:H, 4v8y:BH, 4v8z:BH, 8v83:H, 8v84:H, 8v87:H, 4v91:H, 6woo:H, 6xiq:H, 6xir:H, 8y0u:LH, 6ylg:H, 6ylh:H, 6ylx:H, 6yly:H, 5z3g:L, 7z34:H, 6z6j:LH, 6z6k:LH, 7zpq:BH, 7zrs:BH, 7zs5:BJ, 7zuw:BH, 7zux:EH, 7zw0:LL
4 4cqb:A 402 67 0.0508 0.0498 0.2985 1.5 5akq:A, 5akq:B, 4cqb:B, 4cqc:A, 4cqc:B, 4cqd:A, 4cqd:B, 2qt3:A, 2qt3:B
5 7prj:A 55 36 0.0279 0.2000 0.3056 4.4
6 6or5:A 2058 34 0.0330 0.0063 0.3824 4.5
7 7dxg:A 698 110 0.0685 0.0387 0.2455 5.4 7dxf:A, 7dxf:D, 7dxf:B, 7dxf:C, 7dxg:D, 7dxg:C, 7dxg:B
8 4z0x:A 105 38 0.0355 0.1333 0.3684 5.7
9 7m4v:Z 55 35 0.0355 0.2545 0.4000 6.7 7m4w:Z, 7m4x:Z, 7m4y:Z, 7m4z:Z, 7ryf:Z, 7ryg:Z, 7ryh:Z, 7uvv:Z, 7uvw:Z, 7uvx:Z, 7uvy:Z, 7uvz:Z, 7uw1:Z, 6v39:Z, 6v3a:Z, 6v3b:Z, 6v3d:Z, 6yhs:X, 6ysi:X
10 3i45:A 378 41 0.0355 0.0370 0.3415 7.0
11 3ry9:B 247 69 0.0558 0.0891 0.3188 7.5 3ry9:A
12 7bv3:B 439 56 0.0406 0.0364 0.2857 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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