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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SIYQGGNKLNEDDFRSHVYSLCQLDNVGVLLGAGASVGCGGKTMKDVWKSFKQNYPELLGALIDKYLLVSQIDSDNNLVN
VELLIDEATKFLSVAKTRRCEDEEEEFRKILSSLYKEVTKAALLTGEQFREKNQGKKDAFKYHKELISKLISNRQPGQSA
PAIFTTNYDLALEWAAEDLGIQLFNGFSGLHTRQFYPQNFDLAFRNVHYHAYLYKLHGSTWYQNDSLTVNEVSASQAYDE
YINDIINKDDFYRGQHLIYPGANKYSHTIGFVYGEMFRRFGEFISKPQTALFINGFGFGDYHINRIILGALLNPSFHVVI
YYPELKEAITKVSKGGGSEAEKAIVTLKNMAFNQVTVVGGGSKAYFNSFVEHLPYPVLFPRDNI

The query sequence (length=384) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8j4u:B 401 388 1.0000 0.9576 0.9897 0.0 8j4u:A, 8j4u:C, 8j4u:D, 8j4u:E, 8j4u:F, 8j4u:G, 8j4u:H, 8j4u:I, 8j4u:J, 8j4u:K, 8j4u:L, 8su9:A, 8su9:B, 8su9:C, 8su9:D, 8su9:E, 8su9:F, 8su9:G, 8su9:H, 8su9:I, 8su9:J, 8su9:K, 8su9:L, 8sub:A, 8sub:B, 8sub:C, 8sub:D, 8sub:E, 8sub:F, 8sub:G, 8sub:H, 8sub:I, 8sub:J, 8sub:K, 8sub:L, 8suw:A, 8suw:B, 8suw:C, 8suw:D, 8suw:E, 8suw:F, 8suw:G, 8suw:H, 8suw:I, 8suw:J, 8suw:K, 8suw:L, 8sxx:A, 8sxx:B, 8sxx:C, 8sxx:D, 8sxx:E, 8sxx:F, 8sxx:G, 8sxx:H, 8sxx:I, 8sxx:J, 8sxx:K, 8sxx:L, 8uae:A, 8uae:B, 8uae:C, 8uae:D, 8uae:E, 8uae:F, 8uae:G, 8uae:H, 8uae:I, 8uae:J, 8uae:K, 8uae:L, 8uaf:A, 8uaf:B, 8uaf:C, 8uaf:D, 8uaf:E, 8uaf:F, 8uaf:G, 8uaf:H, 8uaf:I, 8uaf:J, 8uaf:K, 8uaf:L
2 4cqb:A 402 67 0.0521 0.0498 0.2985 1.4 5akq:A, 5akq:B, 4cqb:B, 4cqc:A, 4cqc:B, 4cqd:A, 4cqd:B, 2qt3:A, 2qt3:B
3 5gm2:K 267 87 0.0651 0.0936 0.2874 2.4
4 7prj:A 55 36 0.0286 0.2000 0.3056 4.3
5 7dxg:A 698 110 0.0703 0.0387 0.2455 5.5 7dxf:A, 7dxf:D, 7dxf:B, 7dxf:C, 7dxg:D, 7dxg:C, 7dxg:B
6 3i45:A 378 41 0.0365 0.0370 0.3415 5.7
7 5gm2:B 282 87 0.0599 0.0816 0.2644 5.9 5gm1:A, 5gm1:B, 5gm1:C, 5gm1:D, 5gm1:E, 5gm1:F, 5gm1:G, 5gm1:H, 5gm1:I, 5gm1:J, 5gm1:K, 5gm1:L, 5gm1:M, 5gm1:N, 5gm1:O, 5gm1:P, 5gm1:Q, 5gm1:R, 5gm2:A, 5gm2:C, 5gm2:D, 5gm2:E, 5gm2:F, 5gm2:G, 5gm2:H, 5gm2:I, 5gm2:J, 5gm2:L, 5gm2:M, 5gm2:N, 5gm2:O, 5gm2:P, 5gm2:Q, 5gm2:R
8 4z0x:A 105 38 0.0365 0.1333 0.3684 5.9
9 7m4v:Z 55 35 0.0365 0.2545 0.4000 7.0 7m4w:Z, 7m4x:Z, 7m4y:Z, 7m4z:Z, 7ryf:Z, 7ryg:Z, 7ryh:Z, 7uvv:Z, 7uvw:Z, 7uvx:Z, 7uvy:Z, 7uvz:Z, 7uw1:Z, 6v39:Z, 6v3a:Z, 6v3b:Z, 6v3d:Z, 6yhs:X, 6ysi:X
10 7bv3:B 439 56 0.0417 0.0364 0.2857 8.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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