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BioLiP
>protein
SIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAV

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3f21:A 67 66 1.0000 0.9851 1.0000 3.27e-43 2acj:B, 2acj:C, 2acj:D, 3f21:B, 3f21:C, 3f22:A, 3f22:B, 3f22:C, 3f23:A, 3f23:B, 3f23:C, 2gxb:A, 2gxb:B, 3irq:B, 3irq:A, 3irq:D, 3irq:C, 3irr:C, 3irr:D, 3irr:A, 3irr:B, 1qbj:A, 1qbj:B, 1qbj:C, 5zu1:C, 5zu1:A, 5zu1:B, 5zuo:B, 5zuo:C, 5zuo:D, 5zup:B, 5zup:C, 5zup:D
2 2acj:A 53 60 0.7727 0.9623 0.8500 6.56e-29 5zuo:A, 5zup:A
3 5zu1:D 47 59 0.6667 0.9362 0.7458 5.61e-22
4 7c0i:B 67 39 0.3485 0.3433 0.5897 2.25e-09 7c0i:A, 7c0i:C
5 4kmf:A 62 58 0.2576 0.2742 0.2931 4.65e-05
6 1sfu:A 70 46 0.2727 0.2571 0.3913 1.51e-04 1sfu:B
7 7c0j:B 62 30 0.2727 0.2903 0.6000 4.51e-04 7c0j:A
8 2heo:A 59 59 0.3030 0.3390 0.3390 7.64e-04 2heo:D, 1j75:A
9 4lb5:B 63 61 0.2879 0.3016 0.3115 0.020 4lb5:A, 4lb6:B
10 4ev0:D 214 33 0.1818 0.0561 0.3636 0.096 4ev0:A
11 3qph:A 335 40 0.1818 0.0358 0.3000 1.7 2f5t:X
12 3byr:A 89 29 0.1667 0.1236 0.3793 2.0
13 6zj3:LT 190 28 0.1818 0.0632 0.4286 4.6
14 1c3r:A 372 51 0.2879 0.0511 0.3725 5.2 1c3r:B, 1c3s:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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