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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGPSCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTTPV
ALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHF
RILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGCGFAFCRECKEAYHEGECSAYRVDERAAE
QARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV

The query sequence (length=306) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6n13:B 322 322 0.9837 0.9348 0.9348 0.0 2jmo:A
2 5c1z:A 384 310 0.9542 0.7604 0.9419 0.0 4bm9:A, 5c1z:B, 5c23:A, 5c23:B, 5c9v:A, 6glc:A, 6hue:A, 6hue:B, 4i1f:A, 4i1h:A, 8ik6:C, 8ikm:A, 8ikt:A, 8ikv:C, 8ikv:A, 8jwv:A, 5n2w:A, 5n38:A, 8wzn:A, 8wzo:A
3 4zyn:B 385 309 0.8824 0.7013 0.8738 0.0 4k7d:A, 4k7d:B, 4k7d:C, 4k95:A, 4k95:B, 4k95:C, 4k95:D, 4k95:E, 4k95:F, 4k95:G, 4k95:H, 4k95:I, 4k95:J, 4k95:K, 4k95:L, 7us1:A, 8w31:A, 4zyn:A
4 8ik6:A 250 310 0.7941 0.9720 0.7839 2.25e-169
5 5caw:C 315 312 0.4804 0.4667 0.4712 7.04e-106 5caw:A
6 6djw:A 317 237 0.3791 0.3659 0.4895 8.81e-78 6djx:A
7 2m48:A 141 140 0.2614 0.5674 0.5714 1.04e-49 9c5e:A, 2lwr:A
8 7b5l:H 423 186 0.1634 0.1182 0.2688 4.80e-14 7b5n:H, 4kc9:A, 5udh:A
9 5tte:B 442 186 0.1634 0.1131 0.2688 5.58e-14 7b5m:H, 2m9y:A, 1wd2:A
10 4kbl:A 395 197 0.1732 0.1342 0.2690 8.20e-14 4kbl:B, 5udh:B
11 7od1:A 430 187 0.1699 0.1209 0.2781 3.67e-12 7od1:B
12 8eaz:A 254 219 0.1634 0.1969 0.2283 0.002 8bvl:A, 8bvl:B, 8eaz:B, 7yuj:A, 7yuj:B
13 6sc6:A 365 103 0.0980 0.0822 0.2913 0.12 5edv:A, 5edv:B, 6gzy:A, 6gzy:B, 6kc5:B, 6kc6:A, 6kc6:C, 6kc6:E, 6kc6:G, 6kc6:I, 6kc6:K, 4ljo:A, 4ljp:A, 4ljq:B, 4ljq:C, 4ljq:A, 4ljq:D, 6sc5:A, 6sc7:A, 6sc8:A, 6sc9:A, 7v8f:B, 7v8g:D, 7v8g:C
14 7oni:H 380 148 0.1209 0.0974 0.2500 0.18
15 8s38:B 414 42 0.0425 0.0314 0.3095 2.5 8s38:A, 8s38:C, 8s39:A, 8s39:B, 8s39:C, 8s3a:A, 8s3a:B, 8s3a:C, 8s3a:D, 8s3a:E, 8s3a:F, 8s3b:A, 8s3b:B, 8s3b:C, 8s3b:D, 8s3b:E, 8s3b:F, 8s3b:G, 8s3b:H, 8s3b:I, 8s3b:J, 8s3b:K, 8s3b:L, 8s3c:B, 8s3d:A, 8s3d:B, 8s3d:C, 8s3d:D, 8s3d:E, 8s3d:F
16 8eb0:A 255 37 0.0425 0.0510 0.3514 2.6 7m4m:A, 7m4m:B, 7m4n:A, 7m4n:B, 7m4o:A
17 6yeh:A 410 42 0.0359 0.0268 0.2619 3.4 6yeh:B, 6yeh:C, 6yeh:D, 6yeh:E, 6yeh:F, 6yei:A, 6yei:B, 6yei:C, 6yei:D, 6yei:E, 6yei:F
18 7uy0:A 448 41 0.0458 0.0312 0.3415 3.7 7uy0:B, 7uy3:A
19 8owm:C 413 42 0.0425 0.0315 0.3095 4.1 8owm:A, 8owm:B, 8owm:D, 8owm:E, 8owm:F, 8own:A, 8own:B, 8own:C, 8own:D, 8own:E, 8own:F
20 9bh5:Cg 104 47 0.0458 0.1346 0.2979 4.2 9cai:Cg
21 3dpg:A 338 17 0.0229 0.0207 0.4118 8.1 4c3g:A, 4c3g:B, 3dpg:B, 3dvo:A, 3dvo:B, 3dvo:C, 3dvo:D, 3dw9:A, 3dw9:B, 3mq6:A, 3mq6:B, 3mq6:C, 3mq6:D, 3mq6:E, 3mq6:F, 3mq6:G, 3mq6:H, 3mqy:A, 3mqy:B, 3n78:A, 3n78:B, 3n7b:A, 3n7b:B, 6obj:A, 6obj:B, 7s8d:A, 7s8d:B, 7ss5:A, 7ss5:B
22 8s4g:S 102 63 0.0556 0.1667 0.2698 8.6 9gaw:S, 2m6n:A, 7qe7:S

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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