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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLL
KTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLC

The query sequence (length=156) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2avu:E 156 156 1.0000 1.0000 1.0000 6.29e-116 2avu:F
2 8j56:C 160 156 0.6154 0.6000 0.6154 3.51e-69 8j56:F
3 2i4g:A 289 21 0.0769 0.0415 0.5714 3.9 2h02:A, 2h02:B, 2h03:A, 2h04:A, 2i4h:A, 2i5x:A, 2i5x:B, 8jbn:B, 8jby:A, 8jby:B
4 3j9z:SQ 83 18 0.0641 0.1205 0.5556 5.3 4a2i:Q, 8a3l:Q, 7abz:v, 7ac7:v, 7acj:v, 7acr:v, 4adv:Q, 5afi:q, 7afi:Q, 7afl:Q, 7afo:Q, 8akn:R, 8am9:R, 6awb:T, 6awc:T, 6awd:T, 9ax7:Q, 9ax8:q, 8aye:Q, 8b0x:Q, 7b5k:q, 8b7y:v, 8bf7:u, 8bge:u, 8bgh:u, 8bh4:u, 8bhj:u, 8bhl:u, 8bhn:u, 8bhp:u, 8bil:u, 8bim:u, 7bod:Q, 7boe:Q, 7bof:Q, 7bog:Q, 7boh:Q, 7boi:Q, 6bu8:Q, 6by1:AQ, 6by1:BQ, 6c4i:q, 8cai:Q, 8cep:Q, 8cgj:Q, 8cgr:Q, 8cgu:Q, 9cg5:Q, 9cg6:Q, 9cg7:Q, 7cpj:q, 7d6z:x, 7d80:R, 6dnc:DB, 8eiu:Q, 8ekc:q, 8emm:Q, 6enf:q, 6enj:q, 6enu:q, 8eyq:Q, 8eyt:Q, 9fbv:Q, 8fiz:AS, 8fto:Q, 8fzd:q, 8fze:q, 8fzf:q, 8fzg:q, 8fzh:q, 8fzi:q, 8fzj:q, 8g2u:p, 8g31:p, 8g34:p, 8g38:p, 8g6w:Q, 8g7p:q, 8g7q:q, 8g7r:q, 8g7s:q, 8ghu:q, 6gwt:q, 6gxm:q, 6gxn:q, 6gxo:q, 6gxp:q, 6h4n:q, 5h5u:x, 6h58:q, 6h58:qq, 6hrm:v, 8hsp:Q, 8htz:Q, 8hu1:Q, 6i7v:AQ, 6i7v:BQ, 8ifb:Q, 8ifc:Q, 5iqr:v, 5it8:AQ, 5it8:BQ, 5j5b:AQ, 5j5b:BQ, 5j7l:AQ, 5j7l:BQ, 5j88:AQ, 5j88:BQ, 5j8a:AQ, 5j8a:BQ, 3j9y:q, 5j91:AQ, 5j91:BQ, 3ja1:SQ, 3jbu:Q, 3jbv:Q, 3jcd:q, 3jce:q, 3jcj:x, 3jcn:r, 5jc9:AQ, 5jc9:BQ, 7jss:V, 7jsw:V, 7jsz:V, 8jsg:P, 8jsh:P, 5jte:AQ, 7jt1:V, 7jt2:V, 7jt3:V, 5ju8:AQ, 7k00:Q, 8k3o:Q, 8k4e:Q, 7k50:V, 7k51:V, 7k52:V, 7k53:V, 7k54:V, 7k55:V, 5kcr:1q, 5kcs:1q, 5kps:22, 5kpv:21, 5kpw:21, 5kpx:21, 5l3p:q, 6lkq:P, 7lv0:V, 5lza:q, 5lzb:q, 5lzc:q, 5lzd:q, 5lze:q, 5lzf:q, 7m5d:v, 5mdv:v, 5mdw:v, 5mdy:v, 5mdz:v, 5me0:Q, 5me1:Q, 5mgp:q, 5my1:Q, 7n1p:SQ, 7n2c:SQ, 7n2u:SQ, 7n2v:SQ, 7n30:SQ, 7n31:SQ, 7nar:Q, 7nas:Q, 7nat:Q, 7nau:Q, 7nav:Q, 7nax:Q, 7nbu:Q, 5no2:Q, 5no3:Q, 5no4:Q, 5np6:T, 6nqb:Q, 7nso:q, 7nsp:q, 7nsq:q, 5nwy:G, 7nwt:v, 7nww:u, 7o19:AQ, 7o1a:AQ, 7o1c:AQ, 5o2r:q, 7o5h:Q, 6o7k:P, 6o9j:q, 6o9k:q, 7oe0:Q, 7oe1:Q, 6ofx:V, 6og7:V, 6ogf:V, 6ogg:V, 6ogi:V, 7oi0:Q, 7oif:u, 7oig:u, 7oii:u, 7oiz:Q, 7oj0:Q, 6om6:v, 6ore:v, 6orl:v, 6osk:v, 6osq:v, 6ost:v, 6ot3:v, 7ot5:u, 7otc:q, 6ouo:v, 8p16:v, 8p17:v, 8p18:v, 7p3k:Q, 8peg:Q, 8phj:Q, 7pjs:q, 7pjt:q, 7pju:q, 7pjv:q, 7pjw:q, 7pjx:q, 7pjy:q, 7pjz:q, 8pkl:Q, 8pva:Q, 7q4k:AQ, 8q4f:Q, 6q97:v, 6q98:v, 6q9a:v, 8qbt:y, 7qg8:J, 7qgh:H, 7qgn:J, 7qgr:H, 8qk7:v, 8qoa:Q, 8r3v:Q1, 8r3v:Q2, 8r6c:Q, 8r8m:Q, 8rcl:Q1, 8rcl:Q2, 8rcm:Q1, 8rcm:Q2, 8rcs:Q1, 8rcs:Q2, 8rct:Q1, 8rct:Q2, 7s1g:y, 7s1h:y, 7s1i:y, 7s1j:y, 7s1k:y, 7sa4:v, 7ss9:V, 7ssd:V, 7ssl:V, 7ssn:V, 7sso:V, 7ssw:V, 7st2:V, 7st6:V, 7st7:V, 8syl:q, 6szs:q, 8t5d:p, 8t5h:p, 6tbv:S171, 6tc3:S171, 7tos:S17, 4u1u:AQ, 4u1u:CQ, 4u1v:AQ, 4u1v:CQ, 4u20:AQ, 4u20:CQ, 4u24:AQ, 4u24:CQ, 4u25:AQ, 4u25:CQ, 4u26:AQ, 4u26:CQ, 4u27:AQ, 4u27:CQ, 5u4i:q, 5u9f:Q, 5u9g:Q, 7ug7:SQ, 7uph:D, 8upo:V, 8upr:V, 8uql:V, 8uqm:V, 8uqp:V, 8ur0:V, 8urh:V, 8uri:V, 8urx:V, 8ury:V, 5uyk:Q, 5uyl:Q, 5uym:Q, 5uyn:Q, 5uyp:Q, 5uyq:Q, 5uz4:Q, 4v4h:AQ, 4v4h:CQ, 4v4q:AQ, 4v4q:CQ, 4v4v:AQ, 4v4w:AQ, 4v50:AQ, 4v50:CQ, 4v52:AQ, 4v52:CQ, 4v53:AQ, 4v53:CQ, 4v54:AQ, 4v54:CQ, 4v55:AQ, 4v55:CQ, 4v56:AQ, 4v56:CQ, 4v57:AQ, 4v57:CQ, 4v5b:BQ, 4v5b:DQ, 4v5h:AQ, 4v5y:AQ, 4v5y:CQ, 4v64:AQ, 4v64:CQ, 4v65:AJ, 4v66:AJ, 4v69:AQ, 4v6c:AQ, 4v6c:CQ, 4v6d:AQ, 4v6d:CQ, 4v6e:AQ, 4v6e:CQ, 4v6k:BU, 4v6l:AU, 4v6m:AQ, 4v6n:BT, 4v6o:AT, 4v6p:AT, 4v6q:AT, 4v6r:AT, 4v6s:BS, 4v6t:AQ, 4v6v:AQ, 4v6y:AQ, 4v6z:AQ, 4v70:AQ, 4v71:AQ, 4v72:AQ, 4v73:AQ, 4v74:AQ, 4v75:AQ, 4v76:AQ, 4v77:AQ, 4v78:AQ, 4v79:AQ, 4v7a:AQ, 4v7b:AQ, 4v7c:AQ, 4v7d:BQ, 4v7i:BQ, 4v7s:AQ, 4v7s:CQ, 4v7t:AQ, 4v7t:CQ, 4v7u:AQ, 4v7u:CQ, 4v7v:AQ, 4v7v:CQ, 4v85:AQ, 4v89:AQ, 4v9c:AQ, 4v9c:CQ, 4v9d:AQ, 4v9d:BQ, 4v9o:BQ, 4v9o:DQ, 4v9o:FQ, 4v9o:HQ, 4v9p:BQ, 4v9p:DQ, 4v9p:FQ, 4v9p:HQ, 8vs9:S17, 8vsa:S17, 6vu3:V, 6vwl:p, 6vwm:p, 6vwn:p, 6vyq:V, 6vyr:V, 6vys:V, 6vyt:V, 6vyu:V, 6vyw:V, 6vyx:V, 6vyy:V, 6vyz:V, 6vz2:V, 6vz3:V, 6vz5:V, 6vz7:V, 6vzj:V, 6w6k:Q, 6w77:Q, 6w7m:Q, 6w7n:Q, 6w7w:P, 5wdt:q, 6wd0:V, 6wd1:V, 6wd2:V, 6wd3:V, 6wd4:V, 6wd5:V, 6wd6:V, 6wd7:V, 6wd8:V, 6wd9:V, 6wda:V, 6wdb:V, 6wdc:V, 6wdd:V, 6wde:V, 6wdf:V, 6wdg:V, 6wdh:V, 6wdi:V, 6wdj:V, 6wdk:V, 6wdl:V, 6wdm:V, 5we4:q, 5we6:q, 4wf1:AQ, 4wf1:CQ, 5wf0:q, 5wfk:q, 5wfs:q, 6wnv:V, 6wnw:V, 4woi:AQ, 4woi:DQ, 4www:QQ, 4www:XQ, 6x6t:V, 6x7f:V, 6x7k:V, 6x9q:V, 6xdq:V, 6xdr:V, 6xe0:Q, 6xgf:V, 6xii:V, 6xij:V, 6xza:Q1, 6xzb:Q1, 6y69:q, 7y7c:Q, 7y7d:Q, 7y7e:Q, 7y7f:Q, 7y7g:Q, 7y7h:Q, 4ybb:AQ, 4ybb:BQ, 2ykr:Q, 6ysr:q, 6yss:q, 6yst:q, 6ysu:q, 6ztj:AQ, 6ztl:AQ, 6ztm:AQ, 6ztn:AQ, 6zto:AQ, 6ztp:AQ, 7zta:S171, 6zu1:AQ
5 2gqk:A 173 26 0.0705 0.0636 0.4231 6.2 2ggt:A, 2ggt:B, 2gql:A, 2gqm:A, 2gt6:A, 2hrf:A, 2hrn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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