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BioLiP
>protein
SIVNILSVNVLNNPAKFSDPYKFEITFECLEPLKSDLEWKLTYVGSATSQSYDQILDTLLVGPIPIGINKFVFEADPPNI
DLLPQLSDVLGVTVILLSCAYEDNEFVRVGYYVNNEMEGLNLQEMIKKVKVDISKVWRSILAEKPRVTRFNIQWD

The query sequence (length=155) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2dze:A 160 159 1.0000 0.9688 0.9748 1.05e-109 2dze:B, 2z34:A, 2z34:B, 2z3f:A, 2z3f:H, 2z3f:B, 2z3f:C, 2z3f:D, 2z3f:E, 2z3f:F, 2z3f:G
2 6f0y:A 172 155 0.6516 0.5872 0.6516 1.39e-69 2ygv:A, 2ygv:D, 2ygv:B, 2ygv:C
3 2iij:A 156 153 0.5548 0.5513 0.5621 3.20e-58 8bv1:A, 8bv1:B, 8bv1:E, 8bv1:F, 8bv1:D, 8bv1:C, 8cj1:B, 8cj1:C, 8cj1:D, 8cj1:E, 8cj1:G, 8cj2:A, 8cj2:B, 8cj2:C, 8cj2:D, 8cj3:A, 6f0f:A, 6f0g:A, 6f0g:B, 6f0h:A, 6f0h:C, 2i32:A, 2i32:B, 7lo0:A, 7lo0:B, 7lo0:C, 7lo0:D, 7lo0:E, 7lo0:F, 7lo0:G, 7lo0:H, 6zuf:A, 6zuf:B
4 4s1b:D 214 49 0.0839 0.0607 0.2653 8.3 4s1b:A, 4s1c:D, 4s1c:A
5 2yb0:E 264 131 0.1871 0.1098 0.2214 9.0 2cje:A, 2yay:A, 2yaz:A, 2yaz:B, 2yaz:D, 2yaz:E, 2yb0:A, 2yb0:B, 2yb0:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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