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BioLiP
>protein
SIVFQIALAALVLFSFVMVVGVPVAYASPQNWDRSKPLLYLGSGIWAILVIVVALLNFLV

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7n8o:Z 60 60 1.0000 1.0000 1.0000 1.11e-35 7n8o:z, 7rcv:Z, 7rcv:z, 8tow:Z, 8tow:z
2 3a0b:Z 62 60 0.7167 0.6935 0.7167 3.77e-26 3a0b:z, 3a0h:Z, 3a0h:z, 2axt:Z, 2axt:z, 5b5e:Z, 5b5e:z, 5b66:Z, 5b66:z, 7cji:Z, 7cji:z, 7cjj:Z, 7cjj:z, 7cou:Z, 7cou:z, 7czl:z, 7d1t:Z, 7d1t:z, 7d1u:Z, 7d1u:z, 6dhe:Z, 6dhe:z, 6dhf:Z, 6dhg:Z, 6dhh:Z, 6dho:Z, 6dhp:Z, 5e79:Z, 5e79:z, 5e7c:Z, 5e7c:z, 7eda:Z, 9evx:Z, 9evx:z, 8ez5:Z, 8f4c:Z, 8f4d:Z, 8f4e:Z, 8f4f:Z, 8f4g:Z, 8f4h:Z, 8f4i:Z, 8f4j:Z, 8f4k:Z, 4fby:Z, 4fby:l, 8gn0:Z, 8gn1:z, 8gn1:Z, 8gn2:Z, 8gn2:z, 5gth:Z, 5gth:z, 5gti:Z, 5gti:z, 5h2f:Z, 5h2f:z, 8ir5:Z, 8ir5:z, 8ir6:Z, 8ir6:z, 8ir7:Z, 8ir7:z, 8ir8:Z, 8ir8:z, 8ir9:Z, 8ir9:z, 8ira:Z, 8ira:z, 8irb:Z, 8irb:z, 8irc:Z, 8irc:z, 8ird:Z, 8ird:z, 8ire:Z, 8ire:z, 8irf:Z, 8irf:z, 8irg:Z, 8irg:z, 8irh:Z, 8irh:z, 8iri:Z, 8iri:z, 4ixq:Z, 4ixq:z, 4ixr:Z, 4ixr:z, 6jlj:Z, 6jlj:z, 6jlk:Z, 6jlk:z, 6jll:Z, 6jll:z, 6jlm:Z, 6jlm:z, 6jln:Z, 6jln:z, 6jlo:Z, 6jlo:z, 6jlp:Z, 6jlp:z, 5kaf:Z, 5kaf:z, 5kai:Z, 5kai:z, 3kzi:Z, 5mx2:Z, 5mx2:z, 7nho:Z, 7nhp:Z, 7nhq:Z, 4pbu:Z, 4pbu:z, 4pj0:Z, 4pj0:z, 7rf1:Z, 7rf2:Z, 7rf3:Z, 7rf4:Z, 7rf4:z, 7rf5:Z, 7rf6:Z, 7rf7:Z, 7rf8:Z, 4rvy:Z, 4rvy:z, 5tis:Z, 4tnh:Z, 4tnh:z, 4tni:Z, 4tni:z, 4tnj:Z, 4tnj:z, 4tnk:Z, 4tnk:z, 4ub6:Z, 4ub6:z, 4ub8:z, 5v2c:Z, 5v2c:z, 4v62:AZ, 4v62:BZ, 4v82:AZ, 4v82:BZ, 6w1o:Z, 6w1p:Z, 6w1q:Z, 6w1q:z, 6w1r:Z, 6w1u:Z, 6w1v:Z, 5ws5:Z, 5ws5:z, 5ws6:Z, 5ws6:z, 3wu2:Z, 3wu2:z, 7yq7:Z, 7yq7:z, 5zzn:Z, 5zzn:z
3 8wql:ZD 60 60 0.6333 0.6333 0.6333 8.98e-24 8wql:ZE, 8wql:Z1
4 7y5e:z6 60 54 0.4333 0.4333 0.4815 3.60e-12 7y5e:ZL, 7y7a:Z9, 7y7a:ZE, 7y7a:zO, 7y7a:zZ, 7y7a:Zm
5 8wb4:z 61 53 0.4500 0.4426 0.5094 7.77e-12 8wb4:Z, 8xr6:Z, 8xr6:z
6 7pi5:Z 61 55 0.4333 0.4262 0.4727 1.20e-11 7pi5:z, 7pin:Z, 7pin:Z1, 7pin:z1, 7piw:Z, 7piw:z, 7pnk:Z
7 8xlp:z 61 55 0.4167 0.4098 0.4545 2.15e-11 8xlp:Z
8 7oui:Z 62 60 0.3833 0.3710 0.3833 1.99e-10 3jcu:Z, 3jcu:z, 7oui:z, 5xnl:Z, 5xnl:z, 5xnm:Z, 5xnm:z
9 7ymi:Z 59 55 0.3500 0.3559 0.3818 2.48e-08 7ymi:z, 7ymm:1Z, 7ymm:2Z, 7ymm:3Z, 7ymm:4Z
10 4yuu:Z2 59 57 0.3333 0.3390 0.3509 1.61e-07 4yuu:z2
11 6j3y:Z 59 46 0.3667 0.3729 0.4783 1.87e-04 6j3y:z, 6j3z:Z, 6j3z:z, 6j40:Z, 6j40:z, 7vd5:Z, 7vd5:z
12 8iwh:Z 61 52 0.3667 0.3607 0.4231 0.001 8j5k:Z, 8j5k:z, 6jlu:Z, 6jlu:z
13 6hns:A 443 17 0.1667 0.0226 0.5882 1.9 6hns:B
14 5vol:C 268 49 0.2667 0.0597 0.3265 3.2 5vol:A, 5vol:B, 5vol:D, 5vol:E, 5vol:F, 5vol:G, 5vol:H
15 1qzu:A 160 19 0.1500 0.0563 0.4737 4.4 1qzu:B, 1qzu:C, 1qzu:D
16 8wnf:A 918 27 0.1333 0.0087 0.2963 4.7 8wng:A, 8wni:A, 8wnj:A, 8wo2:A, 8wo3:A
17 6k0b:G 120 19 0.1500 0.0750 0.4737 5.7 6k0a:G, 6k0a:H, 6k0b:H
18 1lf9:A 674 25 0.1500 0.0134 0.3600 8.9 1lf9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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