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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SITESFATAIHGLKVGHLTDRVIQRSKRMILDTLGAGFLGTTTEVFHIASQYSKIYSSNISSTVWGQPDIRLPPTYAAFV
NGVAIHSMDFDDTWHPATHPSGAVLPVLTALAEALPRSPKFSGLDLLLAFNVGIEVQGRLLHFAKEANDMPKRFHPPSVV
GTLGSAAAASKFLGLSSTKCREALAIAVSHAGAPMANAATQTKPLHIGNAAKHGIEAAFLAMLGLQGNKQVLDLEAGFGA
FYANYSPKVLPSIASYSWLLDQQDVAFKRFPAHLSTHWVADAAASVRKHLVAERALLPTDYIKRIVLRIPNVQYVNRPFP
VSEHEARHSFQYVACAMLLDGGITVPSFHECQINRPQVRELLSKVELEYPPDNLPSFNILYCEISVTLKDGATFTDRSDT
FYGHWRKPLSQEDLEEKFRANASKMLSWDTVESLIKIVKNLEDLEDCSVLTTLLKGP

The query sequence (length=457) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6r6u:A 458 457 1.0000 0.9978 1.0000 0.0 6r6u:B
2 8uvx:A 222 67 0.0460 0.0946 0.3134 0.093 8uvk:A, 8uvk:B, 8uvx:B
3 4fyg:A 743 50 0.0372 0.0229 0.3400 0.28 4fye:A, 4fyf:A
4 3w0l:B 598 61 0.0416 0.0318 0.3115 0.32 3w0l:D
5 1j2x:A 70 36 0.0306 0.2000 0.3889 0.32 2k7l:A, 1onv:A
6 2o61:A 498 92 0.0591 0.0542 0.2935 0.48 9bdu:A, 9bdu:B, 9bdv:A, 9bdv:B, 9bdw:A, 9bdw:B, 9bdx:A, 9bdx:B, 3gut:A, 3gut:C, 3gut:E, 3gut:G, 2i9t:A, 1le5:A, 1le5:E, 1le9:A, 1le9:E, 1lei:A, 2o6g:E, 2o6g:F, 2o6g:G, 2o6g:H, 2pi0:A, 2pi0:B, 2pi0:C, 2pi0:D, 3qu6:A, 3qu6:B, 3qu6:C, 1ram:A, 1ram:B, 2ram:A, 2ram:B, 1t2k:A, 1t2k:B, 5u01:A, 5u01:B, 5u01:C, 5u01:D, 1vkx:A
7 4qww:A 529 101 0.0722 0.0624 0.3267 3.7 4qww:B
8 6nr1:A 279 85 0.0481 0.0789 0.2588 4.9 6nr1:B
9 3b69:A 626 133 0.0722 0.0527 0.2481 5.6 2ah2:A, 1ms0:A, 1ms0:B, 1ms1:A, 1ms1:B, 1ms8:A, 1ms8:B, 1ms9:A, 1ms9:B, 3pjq:A, 1s0i:A, 1s0j:A
10 7dpi:C 292 33 0.0284 0.0445 0.3939 6.1 7dpi:A
11 1ofd:A 1491 68 0.0394 0.0121 0.2647 7.6 1ofd:B, 1ofe:A, 1ofe:B
12 1llw:A 1475 68 0.0394 0.0122 0.2647 7.7 1llz:A, 1lm1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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