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BioLiP
>protein
SIRLPAHLRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSPHSGDELYELLQHILKQ

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2qb0:B 241 77 0.9870 0.3154 0.9870 1.04e-51 2qb0:D
2 7n1o:A 257 77 0.9740 0.2918 0.9740 1.66e-51 8fz4:A, 8fz4:B, 8fzv:A, 1sht:X, 1shu:X, 1t6b:Y, 1tzn:a, 1tzn:b, 1tzn:c, 1tzn:d, 1tzn:e, 1tzn:f, 1tzn:g, 1tzn:h, 1tzn:i, 1tzn:j, 1tzn:k, 1tzn:l, 1tzn:m, 1tzn:o
3 9feh:A 264 75 0.9740 0.2841 1.0000 1.03e-50 8bwu:A, 8e1f:D, 8frj:A, 8frk:A, 2qb0:C, 7tw7:A, 7tw8:A, 7tw9:A
4 4mhv:A 94 67 0.3896 0.3191 0.4478 6.04e-12
5 6h42:A 393 64 0.2468 0.0483 0.2969 0.31 6h42:B, 6h45:A, 6h45:B, 7nq4:A, 8omr:A
6 8ro4:A 339 60 0.2078 0.0472 0.2667 2.5 8ro4:C, 8ro4:D, 8ro4:B, 8ro4:E, 8ro4:F
7 5zb8:A 400 29 0.1429 0.0275 0.3793 2.6 7k30:A, 7k31:A, 7k32:A, 7k33:A, 5zb8:B, 5zb8:C, 5zb8:D, 5zb8:E
8 1x0x:A 350 39 0.1688 0.0371 0.3333 2.6 6e8y:A, 6e8z:A, 6e8z:B, 6e90:A, 6e90:B, 6e90:C, 6e90:D, 6pyp:A, 6pyp:B, 1wpq:A, 1wpq:B, 1x0v:A, 1x0v:B
9 2x7x:A 301 80 0.2987 0.0764 0.2875 2.6 2x7x:B
10 6h62:A 370 44 0.1688 0.0351 0.2955 4.0 6h62:B
11 2dqb:C 364 38 0.1818 0.0385 0.3684 4.5 2dqb:A, 2dqb:B, 2dqb:D, 2dqb:E, 2dqb:F
12 7b2i:C 389 64 0.2338 0.0463 0.2812 5.4 7ov9:C, 7ovo:C, 7ovs:C, 7owz:C
13 3ahv:A 472 33 0.1558 0.0254 0.3636 6.5 3aht:A, 3aht:B, 3ahv:B, 7bzm:A, 7bzm:B, 3f4v:A, 3f4v:B, 3f5j:A, 3f5j:B, 3f5k:A, 3f5k:B, 3f5l:A, 3f5l:B, 4qlj:A, 4qlj:B, 4qlk:A, 4qlk:B, 4qll:A, 4qll:B, 2rgl:A, 2rgl:B, 2rgm:A, 2rgm:B, 3scn:A, 3scn:B, 3sco:A, 3sco:B, 3scp:A, 3scp:B, 3scq:A, 3scq:B, 3scr:A, 3scr:B, 3scs:A, 3scs:B, 3sct:A, 3sct:B, 3scu:A, 3scu:B, 3scv:A, 3scv:B, 3scw:A, 3scw:B
14 6s1t:A 512 29 0.1169 0.0176 0.3103 7.0 3kf3:A, 3kf3:B, 6s1t:B, 6s2b:A, 6s2b:B, 3u14:A, 3u14:B, 3u75:A, 3u75:B, 3u75:C, 3u75:D
15 7fdz:A 417 49 0.1948 0.0360 0.3061 7.2
16 8boz:G 558 52 0.1818 0.0251 0.2692 7.7 8boz:E, 8boz:I, 8boz:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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