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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SIRIFPRIAGRSYIIYGQTSGIICKRMEKSDNEFVIYNYISEHYDKFLKKYVPKLYGKNNDMLLLEDLTYNYNNPNVMDV
KIGARKRKSHTSGFFSIRGYTNSHDYKFDPDEYLTSESTINHIKNFMEAGGENRDKTKQVLLKWIMKLSELANDLFEINL
KFDGVSLIFIYDDDCSKCDVNVVDFSRVKLIDTNDQMTISAVTNLIKILSELADNP

The query sequence (length=216) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8t8z:A 217 216 1.0000 0.9954 1.0000 6.68e-161 8t8u:A, 8t8v:A, 8t8w:A, 8t8x:A, 8t8y:A, 8t90:A, 8t91:A, 8t92:A, 8t93:A, 8t95:A, 8t96:A, 8t97:A
2 5w2i:A 239 241 0.3009 0.2720 0.2697 8.94e-12 6m88:A, 6m89:A, 6m8a:A, 6m8b:A, 6m8c:A, 6m8d:A, 6m8e:A, 5w2h:A
3 8ppg:B 243 243 0.2454 0.2181 0.2181 0.001
4 8ppb:A 276 71 0.0926 0.0725 0.2817 0.11 8pp8:A, 8pp8:B, 8pp9:A, 8pp9:B, 8ppa:A, 8ppa:B, 8ppb:B, 8ppc:A, 8ppc:B, 8ppd:A, 8ppd:B, 8ppe:A, 8ppe:B, 8ppf:A, 8ppf:B, 8ppg:A, 8pph:A, 8pph:B, 8ppi:A, 8ppi:B, 8ppj:A, 8ppj:B, 1tzd:A, 1tzd:B, 1w2c:A, 1w2c:B, 1w2d:A, 1w2d:B
5 2a98:A 259 46 0.0741 0.0618 0.3478 0.19
6 2iew:A 258 42 0.0694 0.0581 0.3571 0.26 2if8:A
7 4fxq:A 445 97 0.1481 0.0719 0.3299 0.31 4fk7:A, 4fxq:B
8 4o4e:A 246 49 0.0694 0.0610 0.3061 0.60 4o4d:A, 4o4f:A, 8omi:A
9 2aqx:A 289 42 0.0648 0.0484 0.3333 4.1 2aqx:B
10 7ns3:4 199 15 0.0509 0.0553 0.7333 4.5
11 4bp9:A 710 70 0.0972 0.0296 0.3000 4.6 4bp9:B, 4bp9:C, 4bp9:D, 4bp9:E, 4bp9:F
12 1wdq:A 493 90 0.1019 0.0446 0.2444 9.0 1bfn:A, 1btc:A, 1byb:A, 1byc:A, 1byd:A, 1q6c:A, 1q6d:A, 1q6e:A, 1q6f:A, 1q6g:A, 1v3h:A, 1v3i:A, 1wdr:A, 1wds:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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