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BioLiP
>protein
SIPSYLHADDLGPWGNYLQQVDRVAPYLGSLSRWIETLKRPKRILIVDVPIELDNGTVAHFEGYRVQHNVSRGPGKGGVR
YHQDVTLSEVMALSAWMSVKNAAVNVPYGGAKGGIRVDPRKLSRGELERVTRRYTSEIGIIIGPNTDIPAPDVNTNEQIM
AWMMDTYSMNQGQTATGVVTGKPISLGGSLGRKEATGRGVFVVGCEAAKKKGVEIEGARIAVQGFGNVGGIAAKLFQEAG
AKVIAVQDHTGTIHQPAGVDTAKLLDHVGRTGGVAGFEGAEPMPNDEFWTVETEILIPAALENQITEKNASKIRTKIIVE
GANGPTTTAADDILSANGVLVIPDVIANAGGVTVSYFEWVQWTEDEINHRLERVMREAFAGVWAVAEEHKVSVRTAAFIV
ACKRILMAREMRGLYP

The query sequence (length=416) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4xgi:A 416 416 1.0000 1.0000 1.0000 0.0 4xgi:B, 4xgi:C, 4xgi:D, 4xgi:E, 4xgi:F
2 3aoe:B 424 419 0.6779 0.6651 0.6730 0.0 3aoe:A, 3aog:A, 3aog:E, 3aog:B, 3aog:D, 3aog:C, 3aog:F, 3aog:G, 3aog:I, 3aog:H, 3aog:J, 3aog:L, 3aog:K
3 8xd5:A 419 413 0.4784 0.4749 0.4818 9.81e-129 8hho:A, 8hiq:A, 8hiz:A, 8hj9:A, 8xco:A, 8xcp:A, 8xcq:A, 8xcr:A, 8xcs:A, 8xct:A, 8xcu:A, 8xcv:A, 8xcw:A, 8xcx:A, 8xcy:A, 8xcz:A, 8xd0:A, 8xd1:A, 8xd2:A, 8xd3:A, 8xd4:A, 8xd6:A, 8znb:A, 8znc:A, 8znd:A, 8zne:A, 8zng:A
4 8owm:C 413 392 0.4399 0.4431 0.4668 1.91e-118 8owm:A, 8owm:B, 8owm:D, 8owm:E, 8owm:F, 8own:A, 8own:B, 8own:C, 8own:D, 8own:E, 8own:F
5 6yeh:A 410 396 0.4519 0.4585 0.4747 9.98e-118 6yeh:B, 6yeh:C, 6yeh:D, 6yeh:E, 6yeh:F, 6yei:A, 6yei:B, 6yei:C, 6yei:D, 6yei:E, 6yei:F
6 8s38:B 414 401 0.4279 0.4300 0.4439 1.23e-113 8s38:A, 8s38:C, 8s39:A, 8s39:B, 8s39:C, 8s3a:A, 8s3a:B, 8s3a:C, 8s3a:D, 8s3a:E, 8s3a:F, 8s3b:A, 8s3b:B, 8s3b:C, 8s3b:D, 8s3b:E, 8s3b:F, 8s3b:G, 8s3b:H, 8s3b:I, 8s3b:J, 8s3b:K, 8s3b:L, 8s3c:B, 8s3d:A, 8s3d:B, 8s3d:C, 8s3d:D, 8s3d:E, 8s3d:F
7 1v9l:A 418 391 0.4303 0.4282 0.4578 1.19e-103 1v9l:B, 1v9l:C, 1v9l:D, 1v9l:E, 1v9l:F
8 8kar:A 414 405 0.4159 0.4179 0.4272 2.65e-102 8kao:C, 8kar:B, 8kar:C
9 3aoe:F 417 421 0.3966 0.3957 0.3919 3.35e-101 3aoe:E, 3aoe:C, 3aoe:D
10 6dhd:A 501 349 0.3630 0.3014 0.4327 1.45e-86 8ar7:A, 8ar7:B, 8ar7:C, 8ar7:E, 8ar7:D, 8ar7:F, 8ar8:A, 8ar8:B, 8ar8:C, 8ar8:D, 8ar8:E, 8ar8:F, 6dhd:B, 6dhd:C, 6dhd:D, 6dhd:F, 6dhd:E, 6dhk:A, 6dhk:B, 6dhk:F, 6dhk:C, 6dhk:D, 6dhk:E, 6dhk:G, 6dhk:H, 6dhk:L, 6dhk:I, 6dhk:J, 6dhk:K, 6dhl:A, 6dhl:F, 6dhl:B, 6dhl:C, 6dhl:D, 6dhl:E, 6dhl:G, 6dhl:L, 6dhl:H, 6dhl:I, 6dhl:J, 6dhl:K, 6dhm:A, 6dhm:B, 6dhm:C, 6dhm:D, 6dhm:E, 6dhm:F, 6dhn:A, 6dhn:B, 6dhn:C, 6dhn:D, 6dhn:E, 6dhn:F, 6dhq:A, 6dhq:B, 6dhq:C, 6dhq:D, 6dhq:E, 6dhq:F, 3etd:A, 3etd:E, 3etd:B, 3etd:C, 3etd:D, 3etd:F, 3ete:A, 3ete:E, 3ete:B, 3ete:C, 3ete:F, 3ete:D, 3etg:A, 3etg:B, 3etg:C, 3etg:D, 3etg:E, 3etg:F, 1hwy:A, 1hwy:B, 1hwy:F, 1hwy:C, 1hwy:E, 1hwy:D, 3jd0:A, 3jd0:B, 3jd0:C, 3jd0:D, 3jd0:E, 3jd0:F, 3jd1:A, 3jd1:C, 3jd1:B, 3jd1:D, 3jd1:F, 3jd1:E, 3jd2:A, 3jd2:B, 3jd2:C, 3jd2:D, 3jd2:E, 3jd2:F, 3jd3:A, 3jd3:B, 3jd3:C, 3jd3:D, 3jd3:E, 3jd3:F, 3jd4:A, 3jd4:C, 3jd4:B, 3jd4:D, 3jd4:F, 3jd4:E, 1nqt:A, 1nqt:B, 1nqt:F, 1nqt:C, 1nqt:D, 1nqt:E, 1nqt:G, 1nqt:H, 1nqt:L, 1nqt:I, 1nqt:J, 1nqt:K
11 1bgv:A 449 400 0.3221 0.2984 0.3350 2.77e-55
12 5gud:E 460 396 0.3245 0.2935 0.3409 2.08e-53 5gud:A, 5gud:B, 5gud:C, 5gud:D, 5gud:F, 5ijz:A, 5ijz:B, 5ijz:C, 5ijz:D, 5ijz:E, 5ijz:F, 5ijz:G, 5ijz:H, 5ijz:J
13 7f79:C 458 383 0.2909 0.2642 0.3159 8.32e-41 7f79:A, 7f79:B, 7f79:D, 7f79:E, 7f79:F
14 5xvv:B 459 385 0.3005 0.2723 0.3247 9.34e-38 5xvv:A, 5xvv:C, 5xvx:A, 5xw0:A, 5xwc:A
15 7ecr:A 460 385 0.2933 0.2652 0.3169 1.13e-36 7ecr:B, 7ecr:C, 7ecs:A, 7ecs:B, 7ecs:C, 7ect:A, 7ect:B, 7ect:C
16 1bw9:A 350 369 0.2524 0.3000 0.2846 2.65e-20 1bw9:B, 1bxg:A, 1bxg:B, 1c1d:A, 1c1d:B, 1c1x:A, 1c1x:B
17 8hr6:A 359 357 0.2380 0.2758 0.2773 1.45e-18 8hr6:B
18 6ach:A 364 359 0.2404 0.2747 0.2786 1.82e-18 6ach:B, 6ach:C, 6ach:D, 6ach:E, 6ach:F, 6ach:G, 6ach:H
19 8gxd:A 366 346 0.2332 0.2650 0.2803 8.94e-18
20 1dxy:A 330 34 0.0385 0.0485 0.4706 1.0
21 5t5q:C 245 59 0.0529 0.0898 0.3729 2.6 5t5q:A, 5t5q:B, 5t5q:D
22 6itd:A 328 45 0.0409 0.0518 0.3778 3.4 6k36:A, 6k37:A, 6k38:A
23 2vyn:D 334 30 0.0240 0.0299 0.3333 3.6 2vyv:D
24 3l9w:B 357 47 0.0312 0.0364 0.2766 5.2 3eyw:A, 3eyw:B, 3l9w:A
25 1dss:G 333 31 0.0288 0.0360 0.3871 5.6 1dss:R, 1gpd:G, 1gpd:R, 1ihx:A, 1ihx:B, 1ihx:C, 1ihx:D, 1ihy:A, 1ihy:B, 1ihy:C, 1ihy:D, 1szj:G, 1szj:R
26 3h9e:P 337 29 0.0264 0.0326 0.3793 7.5 5c7o:O, 5c7o:P, 3h9e:O, 3pfw:O, 3pfw:P
27 3gg2:A 431 36 0.0361 0.0348 0.4167 7.9 3gg2:D, 3gg2:B, 3gg2:C
28 2yq5:C 331 32 0.0312 0.0393 0.4062 10.0 2yq5:A, 2yq5:B, 2yq5:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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