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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SIPIYDYQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTW
KNGLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEI
FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLTQRV

The query sequence (length=234) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3nol:A 234 234 1.0000 1.0000 1.0000 5.27e-174 3nom:A, 3nom:B
2 3mbr:X 236 231 0.5470 0.5424 0.5541 5.29e-88
3 2iwa:A 254 235 0.4103 0.3780 0.4085 4.03e-57 2faw:A, 2faw:B
4 3nok:A 234 224 0.3761 0.3761 0.3929 3.38e-53 3nok:B
5 3dr2:A 299 203 0.2265 0.1773 0.2611 0.093 3dr2:B
6 4gn7:A 297 121 0.1154 0.0909 0.2231 0.22 4gn7:B, 4gn8:A, 4gn8:B, 4gn9:A, 4gn9:B, 4gna:A, 4gna:B
7 1x7i:B 238 68 0.0940 0.0924 0.3235 0.65 1x8c:B
8 7dc9:D 161 60 0.0726 0.1056 0.2833 0.67 7dbf:A, 7dbf:D, 7dc9:A, 7dca:A, 7dca:D, 7dcb:A, 7dcb:D, 7dcw:A, 7dcw:D, 7dgc:A, 7dgc:D, 7dh1:A, 7dh1:D, 7dlc:A, 7dlc:D, 7dm5:A, 7dm5:D, 7dm6:A, 7dm6:D, 7dow:A, 7dow:D, 7dox:A, 7dox:D, 7doy:A, 7doy:D, 7dpk:A, 7dpk:D, 7dqn:A, 7dqn:D, 5jfy:A, 5jfy:B, 5jfy:C, 5jfy:D, 7w1q:A, 7w1q:D
9 5ebe:A 418 38 0.0556 0.0311 0.3421 0.96 5ebb:A, 5ebb:B, 5ebb:C, 5ebe:B, 5ebe:C
10 4oli:A 539 65 0.0769 0.0334 0.2769 1.4 6aam:A, 7ax4:A, 7ax4:B, 5c03:A, 5c03:B, 6dbk:A, 6dbm:A, 5f1z:A, 5f20:A, 4gfo:A, 4gih:A, 4gii:A, 4gj2:A, 4gj3:A, 4gvj:A, 7k7o:A, 7k7o:B, 7k7q:A, 7k7q:B, 3lxn:A, 3lxp:A, 6nsl:A, 6nsl:B, 3nyx:A, 3nz0:A, 6nze:A, 6nze:B, 6nzf:A, 6nzf:B, 6nzh:A, 6nzh:B, 6nzp:A, 6nzp:B, 6nzq:A, 6nzq:B, 6nzr:A, 6nzr:B, 6ova:A, 4py1:A, 8s98:A, 8s98:B, 8s98:C, 8s99:A, 8s99:B, 8s99:C, 8s9a:A, 8s9a:B, 8s9a:C, 8tb5:A, 8tb5:B, 8tb6:A, 8tb6:B, 5tkd:A, 5tkd:B, 7uyr:A, 7uys:A, 7uyt:A, 7uyu:A, 6vns:A, 6vnv:A, 6vnx:A, 6vny:A, 5wal:A, 4wov:A, 4wov:B, 6x8f:A, 6x8f:C, 6x8g:A, 3zon:A
11 3l81:A 250 57 0.0684 0.0640 0.2807 1.9 4mdr:A
12 4gnc:A 298 88 0.0897 0.0705 0.2386 2.3 3g4e:A, 3g4e:B, 3g4h:B, 3g4h:A, 4gnb:A, 4gnb:B, 4gnc:B
13 7ckq:C 1061 14 0.0513 0.0113 0.8571 3.6
14 7f75:C 1133 14 0.0513 0.0106 0.8571 3.6
15 6wvj:C 1117 14 0.0513 0.0107 0.8571 3.6
16 1y79:1 680 51 0.0726 0.0250 0.3333 4.6
17 6kif:F 136 31 0.0556 0.0956 0.4194 6.8 6kif:R, 6kif:j, 6kig:F, 6kig:R, 6kig:j

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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