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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SINPPQRIVFVGLGTIAQSFLPLLSKVHDLSTLEIYAIDPKTPPLIEYFANSFGLKFINSAIDQINYRDILVPILGEGTV
LINLSTDVSSLALIELCRSAGALYLDTCIEPWKGGYDDPTIPLHKRTNYHLREQMLSLKKRLGSGVTALVAHGANPGLVS
HFVKRALLDLAEEILGDCKKPSNKEQWAILSQRLGVKVIHVAEYDSQISQKSRERGEFVNTWSVHGFISESQQPAELGWG
SHERSLPTDASMHTDGCGAAIYIEKPGASVRVKTWTPFNGPSLGYLVTHHEAISIADFLTLRTADETYRPTVHYAYRPSD
EAILSVHEWFGNDCMTPEKTKVLRPGDILSGSDYLGVLLMGHEKSSYWYGSILSIEKAKELATLNTATTLQVAAGVLSGY
LWILSHPSAGIIEAEDMDHEVALSYISQYLGELKGVYSDWNPTKNNSDSPWLFSNFVL

The query sequence (length=458) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6y87:A 470 466 1.0000 0.9745 0.9828 0.0 6y87:B, 6y87:C, 6y87:D, 6y87:E, 6y87:F
2 4plp:A 475 465 0.4585 0.4421 0.4516 8.85e-140 4plp:B, 6s3x:A, 6s3x:B, 6s49:A, 6s49:B, 6s4d:A, 6s4d:B, 6s65:A, 6s65:B, 6s6g:A, 6s6g:B, 6s72:A, 6s72:B, 6sep:A, 6sep:B, 4tvb:A, 4tvb:B, 4xq9:A, 4xq9:B, 4xqc:A, 4xqc:B, 4xqe:A, 4xqe:B, 4xqg:A, 4xqg:B, 4xr4:A, 4xr4:B, 4xrg:A, 4xrg:B
3 2ph5:A 459 461 0.4345 0.4336 0.4317 4.47e-130
4 4rl6:A 414 179 0.0852 0.0942 0.2179 0.034 4rl6:B
5 8deb:A 397 225 0.1048 0.1209 0.2133 1.5 8deb:B
6 2c03:B 297 40 0.0262 0.0404 0.3000 2.2 2c03:A, 2cnw:A, 2cnw:B, 2cnw:C, 2j7p:A, 2j7p:B, 1jpj:A, 1jpn:B, 1jpn:A, 1ls1:A, 1ng1:A, 2ng1:A, 1o87:A, 1o87:B, 1okk:A
7 8p5d:LA0 245 37 0.0284 0.0531 0.3514 2.4 8p60:LA0, 8p60:KA0, 7qca:LA0
8 4eso:B 251 58 0.0437 0.0797 0.3448 3.7 4eso:A, 4eso:C, 4eso:D
9 7ofx:B 665 86 0.0568 0.0391 0.3023 4.4 7ofx:A, 7ofx:C, 7ofx:D, 5ohs:A, 5ohs:B, 5ohs:C, 5ohs:D, 5ohs:E, 5ohs:F, 5ohs:G, 5ohs:H, 5ohy:A, 5ohy:B, 5ohy:C, 5ohy:D
10 2q3r:A 351 76 0.0437 0.0570 0.2632 4.5 1vji:A
11 8esq:l 174 40 0.0349 0.0920 0.4000 7.2 8esr:l
12 2c5s:A 372 39 0.0262 0.0323 0.3077 8.0
13 6t62:A 244 53 0.0349 0.0656 0.3019 8.2 6t62:B, 6wpr:A, 6wpr:B
14 8he6:B 120 35 0.0306 0.1167 0.4000 8.5
15 1qax:A 425 48 0.0328 0.0353 0.3125 9.3 8gdn:A, 8gdn:B, 4i4b:A, 4i4b:B, 4i56:A, 4i56:B, 4i6a:A, 4i6a:B, 4i6w:A, 4i6w:B, 4i6y:A, 4i6y:B, 1qax:B, 1qay:A, 1qay:B, 1r31:A, 1r31:B, 8sz6:A, 8sz6:B, 1t02:A, 8vlq:A, 8vlq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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