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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SINLLHKDDTRIDLVFEGYPLEFVNAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHRLALIPFMSEEALDTYRWPEE
CIECTENCEKCYTKIYIEAEAPNEPRMIYSKDIKSEDPSVVPISGDIPIVLLGTNQKISLEARLRLGYGKEHAKFIPVSL
SVVRYYPKVEILANCEKAVNVCPEGVFELKDGKLSVKNELSCTLCEECLRYCNGSIRISFVEDKYILEIESVGSLKPERI
LLEAGKSIIRKIEELEKKLVEVVK

The query sequence (length=264) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3hkz:D 264 264 1.0000 1.0000 1.0000 0.0 4ayb:D, 3hkz:O, 2pa8:D, 2pmz:D, 2pmz:S, 4v8s:AS, 4v8s:BD, 2waq:D, 2wb1:D, 2wb1:S, 2y0s:D, 2y0s:S
2 7ok0:D 261 258 0.6780 0.6858 0.6938 1.95e-132 7oq4:D, 7oqy:D
3 5iy6:C 275 271 0.2841 0.2727 0.2768 1.18e-27 8a3y:C, 7b0y:C, 8b3d:C, 8b3f:C, 7b7u:C, 8bvw:C, 8byq:C, 8bz1:C, 6drd:C, 7edx:q, 7eg7:q, 7eg8:q, 7eg9:q, 7ega:q, 7egb:q, 7egc:q, 7ena:PC, 7enc:PC, 6exv:C, 6gmh:C, 6gml:C, 8gxq:PC, 8gxs:PC, 5iy7:C, 5iy8:C, 5iy9:C, 5iya:C, 5iyb:C, 5iyc:C, 7lbm:C, 7nvr:C, 7nvs:C, 7nvt:C, 7nvu:C, 7nvy:C, 7nvz:C, 7nw0:C, 8oeu:C, 8oev:C, 8oew:C, 8of0:C, 7okx:C, 7oky:C, 7ol0:C, 7oo3:C, 7oob:C, 7oop:C, 7opc:C, 7opd:C, 7ozn:C, 7ozn:O, 7ozo:C, 7ozo:O, 7ozp:C, 7ozp:O, 8p4a:C, 8p4b:C, 8p4e:C, 7pks:C, 8rbx:C, 8s51:C, 8s52:C, 8s54:C, 8s55:C, 8s5n:C, 6ted:C, 8uha:C, 8uhd:C, 8uhg:C, 8ui0:C, 8uis:C, 7unc:C, 7und:C, 8w8e:C, 8w8f:C, 8wak:q, 8wal:q, 8wan:q, 8wao:q, 8wap:q, 8waq:q, 8war:q, 8was:q, 8wat:q, 8wau:q, 8wav:q, 8waw:q, 8wax:q, 8way:q, 8waz:q, 8wb0:q, 7ycx:3, 7zwd:C, 7zx7:C, 7zx8:C
4 8hil:C 300 255 0.2992 0.2633 0.3098 2.28e-25 7eu0:C, 8him:C, 8xmb:C, 8xmc:C, 8xmd:C
5 8hyj:C 285 256 0.2955 0.2737 0.3047 3.40e-25
6 8bws:C 335 267 0.3068 0.2418 0.3034 7.75e-25 7z0h:C, 7z2z:C, 7z30:C, 7z31:C
7 5x4z:C 265 176 0.1932 0.1925 0.2898 1.29e-16 6a5l:C, 6a5o:C, 6a5p:C, 6a5r:C, 6a5t:C, 6a5u:C, 8h0v:C, 8h0w:C, 8he5:C, 6inq:C, 8jh2:C, 8jh3:C, 8jh4:C, 7wbv:C, 7wbw:C, 7wbx:C, 5x4z:O, 5x50:C, 5x51:C, 5x51:O, 7xn7:C, 5xog:C, 5xon:C, 7xse:C, 7xsx:C, 7xsz:C, 7xt7:C, 7xtd:C, 7xti:C, 8yfq:C, 8yfr:C
8 3h0g:C 263 264 0.2689 0.2700 0.2689 1.56e-14 3h0g:O
9 3gtg:C 271 168 0.1780 0.1734 0.2798 3.15e-14 4a3b:C, 4a3c:C, 4a3d:C, 4a3e:C, 4a3f:C, 4a3g:C, 4a3i:C, 4a3j:C, 4a3k:C, 4a3l:C, 4a3m:C, 4a93:C, 2b63:C, 2b8k:C, 4bbr:C, 4bbs:C, 6blo:C, 6blp:C, 6bm2:C, 6bm4:C, 6bqf:C, 4bxx:C, 4bxz:C, 4by1:C, 4by7:C, 5c3e:C, 5c4a:C, 5c4j:C, 5c4x:C, 8cen:C, 8ceo:C, 3cqz:C, 2e2h:C, 2e2i:C, 2e2j:C, 3fki:C, 5fmf:C, 5fyw:C, 5fz5:C, 3gtj:C, 3gtk:C, 3gtl:C, 3gtm:C, 3gto:C, 3gtp:C, 3gtq:C, 6gyk:C, 6gyl:C, 6gym:C, 3h3v:D, 3hou:C, 3hou:O, 3hov:C, 3how:C, 3hox:C, 3hoy:C, 3hoz:C, 1i3q:C, 3i4m:C, 3i4n:C, 1i50:C, 1i6h:C, 6i84:C, 5ip7:C, 5ip9:C, 3j0k:C, 2ja5:C, 2ja6:C, 2ja7:C, 2ja7:O, 2ja8:C, 9ja1:C, 8jch:C, 3k1f:C, 8k5p:C, 3k7a:C, 1k83:C, 7ked:C, 7kee:C, 7kef:C, 3m3y:C, 3m4o:C, 7mei:c, 7mei:C, 7mk9:C, 7mka:c, 7ml0:C, 7ml1:C, 7ml2:C, 7ml4:C, 1nik:C, 7nkx:C, 2nvq:C, 2nvt:C, 2nvx:C, 2nvy:C, 2nvz:C, 7o4i:C, 7o4j:C, 6o6c:C, 7o72:C, 7o73:C, 7o75:C, 5oqj:C, 5oqm:C, 5ot2:C, 3po2:C, 3po3:C, 3qt1:C, 1r5u:C, 2r7z:C, 1r9s:C, 1r9t:C, 2r92:C, 2r93:C, 7rim:C, 7rip:C, 7riq:C, 7riw:C, 7rix:C, 7riy:C, 3rzd:C, 3rzo:C, 3s14:C, 3s15:C, 3s16:C, 3s17:C, 3s1m:C, 3s1n:C, 3s1q:C, 3s1r:C, 3s2d:C, 3s2h:C, 1sfo:C, 5sva:C, 8tug:C, 8tvp:C, 8tvq:C, 8tvs:C, 8tvv:C, 8tvw:C, 8tvx:C, 8tvy:C, 1twa:C, 1twc:C, 1twf:C, 1twg:C, 1twh:C, 5u5q:C, 8u9r:C, 8u9x:C, 8ukq:C, 8ukr:C, 8uks:C, 8ukt:C, 8uku:C, 6upx:C, 6upy:C, 6upz:C, 6uq0:C, 6uq1:C, 6uq2:C, 6uq3:C, 4v1m:C, 4v1n:C, 4v1o:C, 2vum:C, 5vvr:C, 5vvs:C, 5w4u:C, 5w51:C, 1wcm:C, 4x67:C, 4x6a:C, 1y1v:C, 1y1w:C, 4y52:C, 1y77:C, 4y7n:C, 2yu9:C, 7zs9:C, 7zsa:C, 7zsb:C
10 7bkd:A 664 86 0.0909 0.0361 0.2791 0.15 7bkb:A, 7bkb:a, 7bkc:A, 7bkc:a, 7bkd:a, 7bke:A, 7bke:a
11 1aom:B 559 50 0.0644 0.0304 0.3400 0.41 1aof:A, 1aof:B, 1aom:A, 1aoq:A, 1aoq:B, 1dy7:A, 1dy7:B, 1e2r:A, 1e2r:B, 1gq1:A, 1gq1:B, 1h9x:A, 1h9x:B, 1h9y:A, 1h9y:B, 1hcm:A, 1hcm:B, 1hj3:A, 1hj3:B, 1hj4:A, 1hj4:B, 1hj5:A, 1hj5:B, 1qks:A, 1qks:B
12 7qv7:D 448 44 0.0492 0.0290 0.2955 0.50 7qv7:K, 7qv7:Q, 7qv7:R, 7qv7:V, 7qv7:Z
13 2xsj:A 436 41 0.0530 0.0321 0.3415 0.53 2xsj:D
14 3or1:A 435 86 0.0909 0.0552 0.2791 1.1 3or1:D, 3or2:A, 3or2:D
15 6cz7:B 234 58 0.0720 0.0812 0.3276 2.1 6cz7:D, 6cz8:D, 6cz8:B, 6cz9:B, 6cz9:D, 6cza:B, 6cza:D
16 6cfw:N 121 64 0.0682 0.1488 0.2812 2.1
17 7lnu:A 239 30 0.0568 0.0628 0.5000 2.4 7lnt:A, 7lnx:A
18 7lnu:B 261 30 0.0568 0.0575 0.5000 2.5 7lnt:B, 7lnw:A, 7lnw:B, 7lnx:B, 7n9d:A, 7n9d:B
19 6i34:B 954 38 0.0568 0.0157 0.3947 2.9 6i33:A, 6i34:A, 6i34:C, 6i34:D, 6i35:A, 6i35:B, 6i35:C, 6i35:D
20 6i33:B 925 38 0.0568 0.0162 0.3947 3.0
21 8qzi:E 86 81 0.0909 0.2791 0.2963 3.3 7bdw:B, 6rcx:B
22 7p8n:a 642 106 0.1364 0.0561 0.3396 3.3 7p5h:A, 7p5h:D, 7p5h:a, 7p5h:d, 7p8n:A, 7p91:a, 7p91:A, 7p92:A
23 8dy9:B 319 232 0.1742 0.1442 0.1983 3.4
24 6tf9:UP1 569 26 0.0417 0.0193 0.4231 4.3
25 8ch6:U 295 94 0.1023 0.0915 0.2872 5.4 7a5p:P, 8c6j:M, 6ff4:P, 6ff7:P, 9fmd:O, 8i0p:O, 8i0r:O, 8i0s:O, 8i0t:O, 8i0u:O, 8i0v:O, 8i0w:O, 6icz:O, 6id0:O, 6id1:O, 5mqf:P, 6qdv:M, 7qtt:U, 8ro2:O, 7w59:O, 7w5a:O, 7w5b:O, 5xjc:O, 5yzg:O, 5z56:O, 5z57:O, 6zym:P
26 5j6p:B 102 63 0.0720 0.1863 0.3016 5.5 5hj0:A, 5hj0:B, 5hj0:C, 5j6p:A, 5j6p:C
27 8a8o:D 102 44 0.0492 0.1275 0.2955 6.2 8a8o:C
28 6vo5:A 322 58 0.0606 0.0497 0.2759 8.9 2p0w:A, 2p0w:B, 6vo5:B
29 7abi:P 237 78 0.0909 0.1013 0.3077 9.9 7aav:P, 7abg:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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