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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SINLHSAPEYDPSYKLIQLTPELLDIIQDPVQNHQLRFKSLDKDKSEVVLCSHDKTWVLKQRKHSNTVLLMREFVPEQPI
TFDETLLFGLSKPYMDVVGFAKTESEFETRETHGMDPKERFKVLFRLQSQWDLEDIKPLIEELNSRGMKIDSFIMKYARR
KRLGKKTVVTS

The query sequence (length=171) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8twa:B 171 171 1.0000 1.0000 1.0000 1.46e-126
2 6s1c:F 299 114 0.6667 0.3813 1.0000 1.13e-79
3 6s1c:F 299 72 0.3567 0.2040 0.8472 1.97e-33
4 6s1c:B 342 114 0.6667 0.3333 1.0000 6.37e-79
5 6s1c:B 342 72 0.3567 0.1784 0.8472 5.20e-33
6 5okc:B 377 114 0.6667 0.3024 1.0000 1.49e-78 5msm:A, 5msm:D, 5okc:A, 5oki:C, 5oki:G, 6s2e:B, 6s2f:B, 8tw9:B
7 5okc:B 377 66 0.3392 0.1538 0.8788 1.29e-32 5msm:A, 5msm:D, 5okc:A, 5oki:C, 5oki:G, 6s2e:B, 6s2f:B, 8tw9:B
8 4zlf:A 785 33 0.0819 0.0178 0.4242 0.26 4zlg:A, 4zli:A
9 2db3:A 420 144 0.2222 0.0905 0.2639 0.55 2db3:B, 2db3:C, 2db3:D
10 7ea4:A 762 74 0.1170 0.0262 0.2703 0.66 7ea4:B, 7eby:A, 7eby:B, 7eby:C, 7eby:D, 7eby:E, 7eby:F
11 1jer:A 110 59 0.0936 0.1455 0.2712 0.72
12 3orf:A 230 21 0.0585 0.0435 0.4762 0.94 3orf:B, 3orf:C, 3orf:D
13 7cww:A 350 49 0.0994 0.0486 0.3469 2.2
14 3vtf:A 432 52 0.0877 0.0347 0.2885 3.7
15 4fey:A 392 45 0.0760 0.0332 0.2889 4.1
16 1e3a:B 560 70 0.0994 0.0304 0.2429 7.2 1ai4:B, 1ai5:B, 1ai6:B, 1ai7:B, 1ajn:B, 1ajp:B, 1ajq:B, 1fxh:B, 1fxv:B, 1gk9:B, 1gkf:B, 1gm7:B, 1gm8:B, 1gm9:B, 1h2g:B, 1jx9:B, 1k5q:B, 1k5s:B, 1k7d:B, 1kec:B, 1pnk:B, 1pnl:B, 1pnm:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218