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BioLiP
>protein
SILDTYPQICSPNALPGTPGNLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYG
ANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPA
CSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIF
ILGSSYKKELLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIGPEGEIPNIFGKFTVTS

The query sequence (length=307) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3b7n:A 307 307 1.0000 1.0000 1.0000 0.0 3b7z:A, 6sld:A
2 6f0e:A 300 299 0.6189 0.6333 0.6355 8.53e-146 7zg9:A, 7zg9:B, 7zga:A, 7zgb:A, 7zgc:A, 7zgd:A
3 7y10:A 291 269 0.3192 0.3368 0.3643 1.97e-48 7y10:B, 7y11:A, 7y11:B
4 4tlg:A 396 263 0.2573 0.1995 0.3004 1.12e-25 4tlg:B
5 1olm:E 397 274 0.2573 0.1990 0.2883 6.26e-25 1olm:A, 1olm:C, 4omj:A, 4omj:B, 4omk:A, 4omk:B
6 1oiz:A 265 230 0.2020 0.2340 0.2696 1.62e-14 5mue:A, 5mug:A, 1oip:A, 1oiz:B, 1r5l:A, 3w67:A, 3w67:B, 3w67:C, 3w67:D, 3w68:A, 3w68:B, 3w68:D, 6zpd:A
7 7wvt:A 364 237 0.2182 0.1841 0.2827 1.74e-12 7wwd:A, 7wwg:A
8 3w68:C 252 229 0.1889 0.2302 0.2533 4.49e-12
9 4fmm:B 325 232 0.1987 0.1877 0.2629 4.95e-12 4j7q:A, 4j7q:B
10 4ciz:A 284 224 0.1792 0.1937 0.2455 4.26e-10 4cj6:A, 3hx3:A, 3hy5:A
11 6w32:B 288 250 0.1922 0.2049 0.2360 8.87e-08 6w32:A, 6w32:C
12 7e7l:A 770 83 0.0684 0.0273 0.2530 0.56 7e7l:B
13 8z8x:C 400 54 0.0586 0.0450 0.3333 6.0
14 8z9h:C 748 53 0.0586 0.0241 0.3396 7.3 8z90:C, 8z9r:C
15 8z97:C 552 53 0.0586 0.0326 0.3396 7.5
16 4v3p:Le 244 93 0.0814 0.1025 0.2688 7.6 8ip8:CB, 8ipa:CB, 8ipb:CB, 8jiv:CF, 4v7e:CF
17 8fkt:SY 378 39 0.0521 0.0423 0.4103 8.1 8fku:SY, 8fkv:SY, 8fkw:SY, 8fkx:SY, 8fky:SY
18 7dsj:A 363 48 0.0554 0.0468 0.3542 8.9 7dsj:B, 7dso:A, 7dsp:B, 7dsp:A, 7dsr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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