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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQ
QALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAA
SREDLALCPGLGPQKARRLFDVLHEPFLKVP

The query sequence (length=191) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6sxb:G 191 191 1.0000 1.0000 1.0000 2.93e-142 2jnw:A
2 2bgw:A 219 56 0.0733 0.0639 0.2500 0.003
3 8ak4:A 513 86 0.1361 0.0507 0.3023 0.003
4 3c1y:A 349 63 0.1099 0.0602 0.3333 0.17 3c1y:B, 3c21:A, 3c21:B, 3c23:A, 3c23:B, 4yvz:A, 4yvz:B, 4yxj:A, 4yxj:B, 4yxm:A, 4yxm:B
5 7ti7:A 442 26 0.0628 0.0271 0.4615 3.0
6 3ai2:A 263 29 0.0681 0.0494 0.4483 3.4 3ai2:B, 3ai2:H, 3ai2:D, 3ai2:E, 3ai2:C, 3ai2:F, 3ai2:G, 3ai3:A, 3ai3:C, 3ai3:E, 3ai3:G
7 2owo:A 586 37 0.0733 0.0239 0.3784 3.6 4glx:A, 5tt5:A
8 1j04:A 387 51 0.0942 0.0465 0.3529 3.7 4cbr:A, 4cbs:A, 5f9s:A, 5f9s:B, 1h0c:A, 5hhy:A, 5hhy:B, 5luc:A, 5luc:B, 5luc:E, 5luc:G, 5luc:M, 5luc:N, 5luc:S, 5luc:T, 5ofy:A, 5og0:A, 6rv0:A, 6rv1:A, 2yob:A, 2yob:B
9 4qdk:A 219 108 0.1466 0.1279 0.2593 5.5 4qdj:A, 4qdk:B
10 8dzr:A 258 70 0.0890 0.0659 0.2429 5.9
11 4djh:B 448 70 0.0890 0.0379 0.2429 6.4 4djh:A
12 5lum:A 78 33 0.0576 0.1410 0.3333 7.0 5lum:B, 5lum:D, 5lum:C, 5lum:E
13 5xte:J 378 54 0.0733 0.0370 0.2593 7.1 5xte:V, 5xth:AJ, 5xth:AV, 5xti:AJ, 5xti:AV

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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