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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SIEVTFRVKTQQVRRWQMELLMLDATGKEVEPTILSKCIYHLHSSFKQPKRRLNSLPFFIKETGWGEFNLKIECFFIGNA
GKFSIEHDLTFEDDAYAVDYTVDVPHEFSHLNSELSKYFDLP

The query sequence (length=122) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7f5m:A 139 136 1.0000 0.8777 0.8971 4.91e-86 7f5m:B
2 5iok:A 142 130 0.4180 0.3592 0.3923 1.20e-29 5d7e:A, 7f4a:A, 6min:A, 6mio:A, 6miq:A
3 6axj:A 143 48 0.1393 0.1189 0.3542 5.56e-08 6axj:B, 6axj:D, 6axj:C, 5wyi:B, 5wyi:C
4 8jg4:B 154 65 0.1721 0.1364 0.3231 1.33e-07 8jg4:A
5 2ndf:A 141 42 0.1393 0.1206 0.4048 1.20e-05 7eic:A, 7eic:B, 7eid:A, 7eid:B, 5hjb:A, 5hjd:G, 5hjd:K, 5hjd:A, 5hjd:C, 5hjd:E, 5hjd:T, 5hjd:Q, 5hjd:N, 6l5z:A, 6ls6:A, 6ls6:B, 6mil:A, 6mil:C, 6mim:A, 6mim:C, 2ndg:A, 8pj7:A, 4tmp:A, 4tmp:C, 7vkg:A, 7vkh:A, 7vkh:B, 5yyf:A, 5yyf:C
6 6lsd:B 135 76 0.1803 0.1630 0.2895 0.005 5iql:A, 6lsd:A, 5xnv:A
7 5j9s:A 150 42 0.1148 0.0933 0.3333 0.007 7b0t:A, 7b10:A, 7e74:A, 7e74:D, 7e74:C, 7e74:B, 7e7c:A, 6hpw:A, 6hpx:A, 6hpy:A, 6hpz:A, 6ht0:A, 6ht1:A, 8pji:A, 6t1i:A, 6t1j:A, 6t1l:A, 6t1m:A, 6t1n:A, 6t1o:A, 7x88:A, 7x8b:A, 7x8b:C, 7x8f:A, 7x8f:C, 7x8g:A, 7x8g:C
8 8x1c:W 187 32 0.1066 0.0695 0.4062 0.033
9 8iiy:A 506 32 0.1066 0.0257 0.4062 0.052 8dkb:A, 8dkb:B, 8dkb:C, 8dkb:D, 8dkb:E, 8dkb:F, 8dkb:G, 8dkb:H, 8i60:C, 8i60:D, 8iiz:A, 8ij0:A, 8ij0:B, 7jfy:B, 7jfy:A, 7jfy:C, 7jfy:D, 5r68:B, 5r68:A, 5r69:B, 5r69:A, 5vnb:A, 5vnb:B, 5vnb:D, 5xtz:A, 5y8v:D
10 1knp:A 529 18 0.0902 0.0208 0.6111 1.4 1knr:A
11 7nvo:E 249 35 0.0984 0.0482 0.3429 4.1 7nvo:e
12 4ii3:A 986 33 0.0984 0.0122 0.3636 8.2 9b5c:A, 9b5d:A, 9b5e:A, 9b5f:A, 9b5g:A, 9b5h:A, 9b5i:A, 9b5j:A, 9b5k:A, 9b5l:A, 9b5m:A, 9b5n:A, 9b5o:A, 9b5p:A, 9b5q:A, 9b5r:A, 9b5s:A, 9b5t:A, 9b5u:A, 9b5v:A, 9b5w:A, 9b5x:A, 4ii2:A, 4ii3:C, 6o82:A, 6o82:C, 6o83:A, 6o83:C, 5um6:A
13 4ail:C 750 24 0.0984 0.0160 0.5000 10.0 2jgu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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