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BioLiP
>protein
SIEDIVFEKFQPYINWSIDKLCEHFSINKGEKGLNYRIASAILNLKGKTTKSKPFPEVEEFEKSSIVVKTVHFNKKNVNK
ESMSFGAFKFEELANEEWEDSEGYPSAQWRNFLLETRFLFFVVKEDEDGVDIFKGIKFFSMPEEDINGPVKRMWDDTVKK
LKEGVTLEAVPDKSTKDGWRIKNNFVDKSDDLICHVRPHTNNRDYRGGSNADKLPKKINWINRPDSDDYSDEWMTKQSFW
INNDYIKKQVEDLL

The query sequence (length=254) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4pxg:A 466 254 1.0000 0.5451 1.0000 0.0 2reu:A, 7xm0:A, 7xm0:B, 7xm0:C
2 4nap:D 310 138 0.1417 0.1161 0.2609 0.33 4nap:A, 4nap:B, 4nap:C, 4pgn:A, 4pgn:B, 4pgn:C, 4pgn:D, 4pgp:A, 4pgp:B, 4pgp:C, 4pgp:D
3 4r78:A 287 130 0.1417 0.1254 0.2769 4.2 4r7b:A, 4r7b:B
4 3a27:A 219 35 0.0472 0.0548 0.3429 4.3
5 4d0l:E 479 52 0.0551 0.0292 0.2692 9.8 5c4g:E, 4d0l:A, 4d0l:C, 4d0m:A, 4d0m:C, 4d0m:G, 4d0m:I, 4d0m:M, 4d0m:O, 4d0m:Q, 4d0m:S, 4d0m:W, 4d0m:Y, 4d0m:c, 4d0m:g, 5euq:E, 5fbl:A, 5fbq:A, 5fbr:A, 5fbv:A, 5fbw:A, 6gl3:A, 8q6f:A, 8q6g:A, 8q6h:A, 8vof:A, 4wae:A, 4wag:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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