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BioLiP
>protein
SIDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGT
ETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNL
GAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHCKQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNADYTT
GQVFDLSEKLEQSEAQLGRGSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQINI

The query sequence (length=298) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6r6h:E 310 310 1.0000 0.9613 0.9613 0.0 4d10:E, 4d10:M, 4d18:E, 4d18:M, 8h38:E, 8h3a:E, 8h3f:E, 5jog:A, 5joh:A, 5m5q:A, 6r7i:E, 4wsn:E, 4wsn:M, 4wsn:U, 4wsn:c, 4wsn:k, 4wsn:s
2 4f7o:A 235 234 0.7148 0.9064 0.9103 3.05e-157 4f7o:B
3 6msb:c 287 202 0.2685 0.2787 0.3960 3.05e-40 8cvt:c, 6msd:c, 6mse:c, 6msg:c, 6msh:c, 6msj:c, 6msk:c, 7qxn:c, 7qxp:c, 7qxu:c, 7qxw:c, 7qxx:c, 7qy7:c, 7qya:c, 7qyb:c, 5t0c:Ac, 5t0c:Bc, 5t0g:c, 5vfp:c, 5vfq:c, 5vfr:c, 5vfs:c, 7w37:c, 7w38:c, 7w39:c, 7w3a:c, 7w3b:c, 7w3c:c, 7w3f:c, 7w3g:c, 7w3h:c, 7w3i:c, 7w3j:c, 7w3k:c, 7w3m:c, 6wjd:c, 6wjn:c
4 3jck:G 257 191 0.2517 0.2918 0.3927 5.76e-36 3j47:V, 4o8x:B, 4ocl:B, 4ocl:E, 4ocm:B, 4ocm:E, 4owp:B, 5u4p:B, 5w83:B
5 6fju:A 176 134 0.1611 0.2727 0.3582 4.71e-14 6fju:B, 6fnn:A, 6fnn:B, 6fno:A, 6fno:B
6 6gvw:B 262 114 0.1141 0.1298 0.2982 9.22e-10 5cw6:A, 6gvw:G, 6h3c:B, 6h3c:G, 6r8f:A, 6r8f:C
7 5cw3:A 248 104 0.1107 0.1331 0.3173 1.64e-06 5cw3:C, 5cw4:A
8 2znr:A 178 141 0.1107 0.1854 0.2340 9.10e-05 7l97:A, 2znv:A, 2znv:D
9 4msj:A 190 130 0.1040 0.1632 0.2385 1.22e-04 4jxe:A, 4jxe:B, 4k1r:A, 4k1r:C, 7lm3:A, 7lm3:B, 4ms7:A, 4ms7:B, 4msd:A, 4msd:B, 4msj:B, 4msj:C, 4msm:A, 4msm:C, 4msq:A, 4msq:C, 4nql:A, 4pqt:A, 4zd4:A, 4zd4:B, 4zd5:A, 4zd5:B, 4zfr:A, 4zft:A, 4zft:C
10 3rzv:A 179 109 0.0839 0.1397 0.2294 0.011 3rzu:A, 3rzu:B, 3rzu:C, 3rzu:D, 3rzu:E, 3rzu:F, 3rzu:G
11 7eqt:A 304 46 0.0537 0.0526 0.3478 0.35 7eqw:A
12 6cf7:A 322 55 0.0570 0.0528 0.3091 0.64 6lks:A, 6lks:K, 6lks:G, 6lks:I
13 6yw5:66 283 57 0.0570 0.0601 0.2982 1.0 6ywe:66, 6ywx:66, 6ywy:66
14 4rdl:A 297 45 0.0604 0.0606 0.4000 1.4 4rdk:A, 4rdk:B, 4rdl:B
15 7vs8:A 310 46 0.0537 0.0516 0.3478 1.8 7vs8:B, 7vs9:A, 7vs9:B
16 7er1:A 303 46 0.0503 0.0495 0.3261 2.2
17 3htp:A 324 59 0.0470 0.0432 0.2373 2.7 4gxx:A, 3htq:A, 3htt:A, 4juh:A, 4juj:A, 4juj:C, 5vmc:A, 5vmc:C, 5vmc:E, 5vmf:A, 5vmf:C, 5vmf:E, 5vmg:A, 5vmg:C, 5vmg:E, 5vmj:A, 5vmj:C, 5vmj:E, 2wrg:J, 2wrh:H, 2wrh:J, 2wrh:L
18 5d9v:A 211 56 0.0537 0.0758 0.2857 3.1 5d9w:A, 5d9x:A
19 3wn6:A 404 58 0.0638 0.0470 0.3276 5.0 3wn6:B, 3wn6:C, 3wn6:D
20 3vrd:B 400 68 0.0772 0.0575 0.3382 6.4
21 7tu2:A 434 42 0.0638 0.0438 0.4524 6.5 7tu0:A, 7tu0:B, 7tu0:C, 7tu2:B, 7tu2:C, 7tu3:A, 7tu3:B, 7tu3:C, 7tu4:A, 7tu4:B, 7tu4:C, 7tu5:A, 7tu5:B, 7tu5:C, 7tu5:D, 7tu5:E, 7tu5:F, 7tu6:A, 7tu6:B, 7tu6:C, 7tu6:D, 7tu6:E, 7tu6:F, 7tu7:A, 7tu7:B, 7tu7:C, 7tu7:D, 7tu7:E, 7tu7:F, 7tu8:A, 7tu8:B, 7tu8:C, 7tu8:D, 7tu8:E, 7tu8:F
22 8y6o:C 2227 64 0.0604 0.0081 0.2812 7.5 8h6e:5B, 8h6j:5B, 8qp9:A, 6qw6:5A, 6qx9:5A, 8qxd:A, 8r08:A
23 8h6k:5B 2253 64 0.0604 0.0080 0.2812 7.5 8h6l:5B, 8i0u:A, 8i0v:A, 8q7n:A, 8qo9:A, 8qpe:A, 7qtt:a, 8qzs:A
24 8c6j:A 2261 64 0.0604 0.0080 0.2812 7.6 6ah0:A, 6ahd:A, 8bc8:J, 6ff4:A, 6ff7:A, 9fmd:A, 8i0r:A, 8i0t:A, 8i0w:A, 6icz:A, 6id0:A, 6id1:A, 4jk9:A, 4jk9:B, 4jka:A, 4jka:B, 5mqf:A, 5o9z:A, 6qdv:A, 8qoz:A, 8qpa:A, 8qpb:A, 8qpk:A, 8r09:A, 8r0a:A, 8r0b:A, 8rm5:A, 8ro2:A, 7w59:A, 7w5a:A, 7w5b:A, 5xjc:A, 5yzg:A, 6zym:A
25 5z56:A 2232 64 0.0604 0.0081 0.2812 7.8 7aav:A, 7abf:A, 8ch6:a, 7dvq:A, 8i0s:A, 5z58:A
26 8i0p:A 2149 64 0.0604 0.0084 0.2812 8.0 8q7q:A, 8q7v:A, 8q7w:A
27 7abg:A 2174 64 0.0604 0.0083 0.2812 8.3 7abi:A, 8q91:A, 8rc0:A
28 8qp8:A 1918 64 0.0604 0.0094 0.2812 8.6
29 8q7x:A 1914 64 0.0604 0.0094 0.2812 8.8
30 5z57:A 1978 64 0.0604 0.0091 0.2812 8.8
31 8qbh:A 377 56 0.0537 0.0424 0.2857 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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