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BioLiP
>protein
SHTQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHADLL

The query sequence (length=39) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5kn5:C 40 39 1.0000 0.9750 1.0000 3.51e-24 5kn5:F
2 8em4:A 3818 29 0.3333 0.0034 0.4483 0.017 8em4:B
3 8em7:A 4378 29 0.3333 0.0030 0.4483 0.017 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
4 8jxj:A 570 29 0.3077 0.0211 0.4138 0.043 8jxj:B
5 7pgn:B 438 16 0.2051 0.0183 0.5000 1.2 7pgm:B, 7pgn:A, 2wfx:B
6 6a5n:A 502 13 0.2051 0.0159 0.6154 2.2
7 6a5m:A 488 13 0.2051 0.0164 0.6154 2.4 6a5k:A
8 2hox:B 427 20 0.1795 0.0164 0.3500 2.7 2hor:A, 2hox:C, 2hox:A, 2hox:D, 1lk9:B, 1lk9:A
9 4pe8:A 260 25 0.2821 0.0423 0.4400 3.9 1xwy:A
10 7zke:E 1623 24 0.2821 0.0068 0.4583 4.2
11 5u89:A 1039 23 0.1795 0.0067 0.3043 4.9
12 5b4x:A 710 32 0.2564 0.0141 0.3125 5.8 3a7q:A, 5b4x:C, 2e26:A
13 3h9u:C 435 18 0.2564 0.0230 0.5556 8.2 3h9u:A, 3h9u:B, 3h9u:D
14 3dcp:A 277 10 0.1795 0.0253 0.7000 9.2 3dcp:B, 3dcp:C, 6nlr:A, 6nlr:B, 6nlr:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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