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BioLiP
>protein
SHSGVNQLGGVFVNGRPLPDSTRQRIVELAHSGARPCDISRILQVSNGCVSKILGRYYATGSIRPRAIGGSKPRVATPEV
VSKIAQYKQECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASEKQQ

The query sequence (length=133) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6pax:A 133 133 1.0000 1.0000 1.0000 1.54e-95
2 1k78:A 124 123 0.7143 0.7661 0.7724 1.17e-68 1k78:I, 1k78:E, 1mdm:A
3 1pdn:C 123 120 0.5639 0.6098 0.6250 2.77e-52
4 4q0z:A 322 38 0.0827 0.0342 0.2895 2.5 4q0w:A, 4q0z:B, 4q0z:E, 4q0z:F
5 7x2b:A 217 40 0.1053 0.0645 0.3500 4.5
6 8dhl:B 853 19 0.0827 0.0129 0.5789 5.7 8dhl:A
7 5mdn:A 761 46 0.0902 0.0158 0.2609 9.7 5mdn:B
8 3iu7:A 284 21 0.0827 0.0387 0.5238 10.0 4iec:A, 4if7:A, 3iu8:A, 3iu9:A, 4ook:A, 3pka:A, 3pkb:A, 3pkc:A, 3pkd:A, 3pke:A, 3ror:A, 1yj3:A, 5yoh:A, 5yoi:A, 5ypd:A, 5ypj:A, 5yxf:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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