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BioLiP
>protein
SHMYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDSAFWLEVEGNSMTTPTSFPDGMLILVDPEQAVEPGDFCI
ARLGGDEFTFKKLIRDSGQVFLQPLNPQYPMIPCNESCSVVGKVIASQ

The query sequence (length=128) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3bdn:A 234 129 0.9453 0.5171 0.9380 2.26e-84 3bdn:B, 2hnf:A, 2ho0:A, 1lli:A, 1lli:B, 1lmb:3, 1lmb:4, 1rio:A, 1rio:B
2 8b0v:A 124 72 0.1719 0.1774 0.3056 0.003 8b0v:B
3 2fkc:A 247 62 0.1484 0.0769 0.3065 1.1 2fkc:B, 2fkh:B, 2fl3:A, 2flc:A
4 4jmh:A 200 43 0.1250 0.0800 0.3721 1.3 4jmg:A
5 2g2n:C 112 61 0.1406 0.1607 0.2951 1.9 2g2n:A, 2g2n:B, 2g2n:D, 2g2p:A, 2g2p:B, 2g2p:C, 2g2p:D
6 4riz:C 476 61 0.1328 0.0357 0.2787 2.1 4riz:A, 4riz:D, 4rj0:D, 4rlg:A, 4rlg:B, 4rlg:D, 4rlg:C, 4rm1:B, 4rm1:C
7 8dgo:B 218 63 0.1484 0.0872 0.3016 3.1 2aoa:A, 2aoa:B, 2aob:A, 2aob:B, 2aob:C, 2aob:D, 1aze:A, 1bm2:A, 1bmb:A, 3c7i:A, 5cdw:B, 5cdw:K, 5cdw:O, 5cdw:Y, 5cdw:d, 5cdw:Z, 5cdw:V, 5cdw:P, 5cdw:L, 5cdw:H, 5cdw:C, 5cdw:E, 5cdw:U, 5cdw:c, 5cdw:A, 5cdw:G, 1cj1:A, 1cj1:B, 1cj1:C, 1cj1:D, 1cj1:E, 1cj1:F, 1cj1:G, 1cj1:H, 1cj1:I, 1cj1:J, 1cj1:K, 1cj1:L, 1fyr:A, 1fyr:B, 1fyr:C, 1fyr:D, 1gbq:A, 2gbq:A, 3gbq:A, 4gbq:A, 2h5k:A, 2huw:A, 2huw:B, 3imd:A, 3imd:B, 3imj:A, 3imj:B, 3in7:A, 3in7:C, 3in8:A, 1io6:A, 1jyq:A, 1jyq:B, 1jyr:A, 3kfj:A, 7mph:A, 7mph:B, 7mph:C, 7mph:D, 7mph:E, 7mph:F, 3mxc:A, 3mxy:A, 3n7y:A, 3n7y:B, 3n7y:C, 3n84:A, 3n84:B, 3n84:C, 3n84:D, 3n84:E, 3n84:F, 3n8m:A, 3ov1:A, 3ove:A, 4p9v:A, 4p9z:A, 1qg1:E, 3s8l:A, 3s8n:A, 3s8o:A, 1tze:E, 2vwf:A, 2w0z:A, 3wa4:A, 6wm1:A, 6wm1:C, 6wo2:A, 6wo2:B, 1x0n:A, 1zfp:E
8 7wrg:B 783 32 0.0938 0.0153 0.3750 4.9
9 7wrg:A 812 32 0.0938 0.0148 0.3750 5.3
10 6uv8:A 183 36 0.0781 0.0546 0.2778 5.9 6uvb:A
11 2vz9:B 2086 53 0.1172 0.0072 0.2830 7.1 2vz9:A
12 2i3g:A 347 46 0.1094 0.0403 0.3043 7.2 2i3g:B, 7nnq:A, 7nnq:B, 7nnq:C, 7nnq:D, 7nnr:A, 7nnr:B, 7not:A, 7not:B, 7not:C, 7not:D, 7nph:C, 7npj:B
13 7o0u:C 301 20 0.0703 0.0299 0.4500 8.6 7o0v:C, 7o0w:C, 7o0x:C
14 6wg3:A 561 36 0.1172 0.0267 0.4167 9.6 6wg6:A, 6wg6:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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