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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SHMTLTHTITIGDVRRELPIVRVADDARIAFLKLYGDVELTVACARALAGRMPADVDVIVGPETGGILLAHELAEHSGRP
YVIARKKLRPNMVKPLRVPVQSQELFLGEDDAALIKGRRVAVVDEVISSGGTLKALHELVAAAGGTVQQVLTVATEGERR
PDVESLLHLPVYTD

The query sequence (length=174) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7f06:A 181 180 1.0000 0.9613 0.9667 4.43e-120 7f06:B
2 6fci:A 179 100 0.1839 0.1788 0.3200 1.21e-05 6fch:A, 6fch:B, 6fci:D, 6fci:B, 6fci:C, 6fcl:A, 6fcl:B, 6fd4:B, 6fd4:A, 6fd5:A, 6fd5:B, 6fd6:A, 6fd6:B, 6hgp:A, 6hgq:A, 6hgq:C, 6hgq:D, 6hgq:B, 6hgr:A, 6hgr:B, 6hgs:A, 6hgs:B, 1ore:A, 4x44:A, 4x45:B, 1zn7:A, 1zn7:B, 1zn8:A, 1zn8:B, 1zn9:B
3 4m0k:C 176 98 0.1954 0.1932 0.3469 4.22e-05 4m0k:A, 4m0k:B, 4m0k:D
4 3mbi:A 287 130 0.1609 0.0976 0.2154 1.06e-04 3lpn:A, 3lpn:B, 3lrt:A, 3lrt:B, 3mbi:C, 3mbi:B, 3mbi:D, 3nag:A, 3nag:B
5 5vn4:A 237 101 0.1839 0.1350 0.3168 0.005 5vn4:B
6 5znq:A 183 99 0.1782 0.1694 0.3131 0.045 5b6h:A, 5y07:A, 5y07:B, 5zc7:A, 5zc7:B, 5zmi:A, 5znq:B, 5zoc:A
7 1lh0:A 213 130 0.2126 0.1737 0.2846 0.048 1lh0:B, 1opr:A, 1oro:A, 1sto:A
8 8izj:B 183 99 0.1724 0.1639 0.3030 0.053 8izj:A, 7y94:A, 7y94:B
9 4c25:A 212 115 0.1782 0.1462 0.2696 0.062 4c24:A
10 1mzv:A 216 103 0.1609 0.1296 0.2718 0.065
11 7rmw:A 270 124 0.1954 0.1259 0.2742 0.073 1p4a:A, 1p4a:B, 1p4a:C, 1p4a:D, 7rmw:B, 7rmw:C, 7rmw:F
12 4twb:A 278 87 0.1207 0.0755 0.2414 0.26 4twb:B, 4twb:C, 4twb:D, 4twb:E, 4twb:F
13 6lbp:A 460 111 0.1724 0.0652 0.2703 0.28 6lbp:B
14 1l1q:A 181 95 0.1667 0.1602 0.3053 0.28 1l1r:A
15 2igb:B 173 98 0.1782 0.1792 0.3163 0.31 2igb:A, 4p83:A, 4p83:B, 4p83:C, 4p83:D, 1xz8:A, 1xz8:B, 1xzn:A, 1xzn:B
16 6asv:C 311 103 0.1437 0.0804 0.2427 0.46 6asv:A, 6asv:B, 4s2u:A, 7xmu:A, 7xmu:F, 7xmu:C, 7xmu:D, 7xmu:B, 7xmu:E, 7xmv:A, 7xmv:F, 7xmv:C, 7xmv:E, 7xmv:B, 7xmv:D, 7xn3:A, 7xn3:E, 7xn3:C, 7xn3:B, 7xn3:D, 7xn3:F
17 2jbh:B 213 30 0.0690 0.0563 0.4000 0.60 2jbh:A
18 8xha:A 401 149 0.2529 0.1097 0.2953 0.68 8i7u:C, 8i7u:F, 8i7u:A, 8i7u:E, 8i7u:B, 8i7u:D, 8xha:B, 8xhd:A, 8xhd:B, 8xhk:C, 8xhk:A, 8xhk:B, 8xhk:E, 8xhk:D, 8xhk:F
19 1qb7:A 236 38 0.0747 0.0551 0.3421 0.70 1qb8:A
20 7pn0:A 312 113 0.1839 0.1026 0.2832 0.77 7pn0:B, 5t3o:A, 5t3o:B, 5t3o:C
21 5yw5:A 178 86 0.1437 0.1404 0.2907 2.0 5yw5:B, 5yw5:C, 5yw5:D
22 3dah:C 300 98 0.1322 0.0767 0.2347 2.5 3dah:A, 3dah:B
23 4p86:A 177 82 0.1322 0.1299 0.2805 2.8 4p86:B, 4p86:C, 4p86:D
24 1gph:1 465 115 0.1667 0.0624 0.2522 3.3 1ao0:A, 1ao0:B, 1ao0:C, 1ao0:D, 1gph:2, 1gph:3, 1gph:4
25 3oa8:B 180 22 0.0632 0.0611 0.5000 3.9 3oa8:D, 3oa8:F, 3ocd:B, 3ocd:D
26 4rv4:B 211 40 0.0805 0.0664 0.3500 4.1 4rv4:A, 4rv4:C
27 1u9z:A 274 30 0.0690 0.0438 0.4000 4.1 1u9z:B, 1u9z:C, 1u9z:D
28 6qe2:A 257 18 0.0632 0.0428 0.6111 4.3 6qe2:B
29 5knx:B 176 46 0.0747 0.0739 0.2826 4.3 1g9s:A, 1g9s:B, 1g9t:A, 1g9t:B, 1grv:B, 1grv:A, 1j7j:A, 1j7j:B, 5knr:A, 5knr:B, 5kns:A, 5kns:B, 5knt:A, 5knt:B, 5knu:A, 5knu:B, 5knv:A, 5knv:B, 5knx:A
30 2uvn:A 399 87 0.1379 0.0602 0.2759 5.2 2uuq:A, 2uvn:B, 2wgy:A, 2wh8:A, 2wh8:B, 2wh8:C, 2wh8:D, 2whf:A
31 7kq3:A 825 43 0.0805 0.0170 0.3256 5.5 7kq3:B, 7kq3:C, 7kq3:D
32 1ibs:B 299 86 0.1264 0.0736 0.2558 6.4 1dku:A, 1dku:B, 1ibs:A
33 6wn8:E 210 57 0.1207 0.1000 0.3684 7.9 6wn8:F, 6wn8:A, 6wn8:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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