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BioLiP
>protein
SHMRVYHECFGKCKGLLVPELYSSPSAACIQCLDCRLMYPPHKFVVHSHKALENRTCHWGFDSANWRAYILLSQDYTGKE
EQARLGRCLDDVKEKFD

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1mr1:C 97 97 1.0000 1.0000 1.0000 3.24e-71 1mr1:D
2 5c4v:B 96 95 0.4845 0.4896 0.4947 1.19e-32 5c4v:D, 5c4v:F
3 6kwy:c 1811 38 0.1443 0.0077 0.3684 0.76 8cvs:c, 6kwx:A, 7naq:c
4 6rey:c 1773 38 0.1443 0.0079 0.3684 0.79 6rey:d
5 4bas:A 172 39 0.1031 0.0581 0.2564 1.2
6 6hif:G 531 50 0.1546 0.0282 0.3000 1.7 6hif:I, 6hif:H, 6hif:A, 6hif:C, 6hif:B, 6hif:D, 6hif:F, 6hif:E, 6hif:J, 6hif:L, 6hif:K, 6hif:M, 6hif:O, 6hif:N, 6hif:P, 6hif:R, 6hif:Q, 6hif:S, 6hif:U, 6hif:T, 6hif:V, 6hif:X, 6hif:W
7 6i0x:B 422 78 0.2165 0.0498 0.2692 2.4 5ak7:A, 5ak8:A, 6i0x:A, 4ytb:A, 4ytg:A
8 2fgy:A 471 21 0.1134 0.0234 0.5238 2.4 2fgy:B
9 4hcy:A 352 22 0.1031 0.0284 0.4545 3.0 4hcy:B, 4hcy:C, 4hcy:D, 4hcy:E, 4hcy:F
10 5anb:K 1120 15 0.0928 0.0080 0.6000 4.3 5anc:K
11 6m0q:A 504 31 0.1340 0.0258 0.4194 5.3 4fas:A, 4fas:C, 4fas:B, 1fgj:A, 1fgj:B, 6m0p:A, 6m0p:C, 6m0p:E, 6m0q:C, 6m0q:E, 6m0q:G, 6m0q:I, 6m0q:K, 4n4n:A, 4n4n:C, 4n4n:E, 4n4o:A, 4n4o:C, 4n4o:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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