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BioLiP
>protein
SHMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAM
LLIAALREKAYPVVVEDFWEAWKAVQLKKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKK
IKKMKPEELLEIVGKSVIDPLAAKIIARTGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP

The query sequence (length=219) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2bmu:B 226 225 0.9863 0.9558 0.9600 2.65e-153 2bmu:A, 2bri:A, 2bri:B, 2ji5:A, 2ji5:B
2 2j4j:F 226 234 0.3699 0.3584 0.3462 5.64e-29 2j4j:A, 2j4j:E, 2j4j:B, 2j4j:D, 2j4j:C, 2j4k:A, 2j4k:B, 2j4k:D, 2j4k:E, 2j4k:F, 2j4l:A, 2j4l:B, 2j4l:C, 2j4l:D, 2j4l:E, 2j4l:F, 2j4l:G, 2j4l:I, 2j4l:J, 2j4l:K, 2j4l:L
3 2j4k:C 206 225 0.3562 0.3786 0.3467 6.92e-27 2j4l:H
4 3ek5:A 241 236 0.3014 0.2739 0.2797 7.96e-14 3ek5:B, 3ek5:C, 3ek5:F, 3ek5:E, 3ek5:D
5 2bne:B 238 236 0.3288 0.3025 0.3051 2.39e-12 2bnd:A, 2bnd:B, 2bne:A, 2bnf:A, 2bnf:B, 2v4y:A, 2v4y:E, 2v4y:F, 2v4y:B, 2v4y:D, 2v4y:C
6 2va1:B 235 181 0.2557 0.2383 0.3094 1.14e-09 2va1:A, 2va1:C, 2va1:D, 2va1:E, 2va1:F
7 2jjx:A 244 197 0.2511 0.2254 0.2792 5.32e-08 2jjx:B, 2jjx:C
8 5yei:C 397 51 0.1050 0.0579 0.4510 6.68e-07 5yei:D, 5yei:B, 5yei:A, 5yei:F, 5yei:E, 5yei:H, 5yei:G
9 3nwy:B 231 239 0.2603 0.2468 0.2385 1.13e-06 7bes:A, 7bes:B, 7bes:C, 7bix:A, 7bix:C, 7bix:B, 7bix:E, 7bix:D, 7bix:G, 7bix:I, 7bix:H, 7bix:K, 7bix:J, 7bl7:B, 7bl7:A, 7bl7:C, 7bl7:F, 7bl7:D, 7bl7:E, 7bl7:I, 7bl7:K, 7bl7:J, 7bl7:H, 7bl7:L, 7bl7:G, 3nwy:A, 3nwy:D, 3nwy:C, 3nwy:E, 3nwy:F
10 8u0k:A 247 251 0.2968 0.2632 0.2590 2.47e-06 8u0k:B, 8u0l:A, 8u0l:B, 8u0m:A, 8u0m:B, 8u0n:A, 8u0n:B
11 3c1m:C 468 84 0.1461 0.0684 0.3810 3.06e-06 3c1m:A, 3c1m:B, 3c1m:D, 3c1n:A, 3c1n:B, 3c1n:C, 3c1n:D, 3c20:A, 3c20:B, 2hmf:A, 2hmf:B, 2hmf:C, 2hmf:D
12 6rke:A 272 237 0.2831 0.2279 0.2616 3.47e-06 4f6t:A, 6gu5:A, 6guj:A, 6gwb:A, 6gwv:A, 6gwv:P, 6gx4:A, 6h6w:A, 6h73:A, 6h74:A, 6h8b:A, 6h8h:A, 4ndo:A, 4ndp:A, 4ndq:A, 4ndr:A, 5o5w:A, 2ogx:A, 6ris:A, 6rj4:A, 6rj4:C, 6rj4:E, 6rkd:A, 6rkd:C, 6rkd:E, 6rkd:G, 6rkd:I, 6rkd:K, 6rke:C, 6rke:E, 6rke:G, 6rke:I, 6rke:K, 6yt3:A, 7z5j:A, 7z5j:C, 7z5j:E, 7z5j:I, 7z5j:G, 7z5j:K, 7zqq:A, 7zr4:A, 7zse:A
13 6yt3:B 376 209 0.2192 0.1277 0.2297 1.26e-05 4f6t:B, 6gu5:B, 6guj:B, 6gx4:B, 6h6w:B, 6h73:B, 6h74:B, 6h8b:B, 6h8h:B, 4ndo:B, 4ndp:B, 4ndq:B, 4ndr:B, 5o5w:B, 6ris:B, 6rj4:B, 6rj4:D, 6rj4:F, 6rkd:B, 6rkd:F, 6rkd:D, 6rkd:H, 6rkd:J, 6rkd:L, 6rke:B, 6rke:D, 6rke:F, 6rke:H, 6rke:J, 6rke:L, 7z5j:B, 7z5j:D, 7z5j:F, 7z5j:H, 7z5j:J, 7z5j:L, 7zqq:B, 7zr4:B, 7zse:B
14 4a7x:C 234 160 0.1963 0.1838 0.2687 1.42e-05 4a7w:A, 4a7w:B, 4a7x:B, 4a7x:D, 4a7x:E
15 3lkk:B 238 39 0.0822 0.0756 0.4615 1.63e-05 3lkk:A, 3ll5:A, 3ll5:B, 3ll5:C, 3ll5:D
16 2j5t:D 365 85 0.1370 0.0822 0.3529 5.27e-05 2j5t:A, 2j5t:B, 2j5t:C, 2j5t:E, 2j5t:F, 2j5t:G
17 3ab4:A 370 41 0.0868 0.0514 0.4634 1.06e-04 3ab4:C, 3ab4:E, 3ab4:G, 3ab4:I, 3ab4:O
18 3aaw:C 392 41 0.0868 0.0485 0.4634 1.11e-04 3aaw:A, 3aaw:B, 3aaw:D, 3ab2:A, 3ab2:B, 3ab2:C, 3ab2:D, 3ab2:E, 3ab2:F, 3ab2:G, 3ab2:H, 3ab2:I, 3ab2:J, 3ab2:K, 3ab2:L, 3ab2:M, 3ab2:N, 3ab2:O, 3ab2:P, 3ab4:B, 3ab4:D, 3ab4:F, 3ab4:H, 3ab4:J, 3ab4:K, 3ab4:L, 3ab4:M, 3ab4:N, 3ab4:P, 2dtj:A, 2dtj:B
19 2ako:A 241 218 0.2511 0.2282 0.2523 1.26e-04 2ako:B, 2ako:C, 2ako:D
20 3ll9:B 249 151 0.1826 0.1606 0.2649 0.002 3ll9:A
21 7wx3:B 258 38 0.0685 0.0581 0.3947 0.006 7wx3:A, 7wx3:C, 7wx3:D, 7wx4:A
22 7f5x:A 236 34 0.0639 0.0593 0.4118 0.008 7f5x:B, 7f5x:C, 7f5x:D
23 7lnu:B 261 201 0.2192 0.1839 0.2388 0.009 7lnt:B, 7lnw:A, 7lnw:B, 7lnx:B, 7n9d:A, 7n9d:B
24 3l76:A 585 62 0.0913 0.0342 0.3226 0.011 3l76:B
25 7lnu:A 239 208 0.2237 0.2050 0.2356 0.015 7lnt:A, 7lnx:A
26 8crv:A 312 47 0.0913 0.0641 0.4255 0.018
27 5myi:D 165 150 0.1598 0.2121 0.2333 0.054 5myd:A, 5myd:B, 5myd:C, 5myd:D
28 3k4y:A 260 107 0.1233 0.1038 0.2523 0.13 3k4y:B, 3k52:A, 3k52:B, 3k56:A, 3k56:B
29 8j0g:B 274 35 0.0685 0.0547 0.4286 0.37 8j0e:B, 8j0f:C, 8j0f:A, 8j0f:B, 8j0f:D, 8j27:B, 8j28:C, 8y2h:B, 8y2h:F, 8y2h:G, 8y2h:H
30 8fq9:A 455 122 0.1416 0.0681 0.2541 0.70 7l16:A, 7l17:A
31 2j0w:A 447 91 0.1142 0.0559 0.2747 0.74 2j0x:A, 2j0x:B
32 3wwm:A 269 77 0.1050 0.0855 0.2987 0.75
33 3tvi:E 439 115 0.1416 0.0706 0.2696 2.2 3tvi:A, 3tvi:B, 3tvi:C, 3tvi:D, 3tvi:G, 3tvi:H, 3tvi:I, 3tvi:L
34 3tzl:B 320 54 0.0822 0.0563 0.3333 2.4 3tzl:A
35 5b8i:A 359 36 0.0457 0.0279 0.2778 2.5 6tz7:A
36 8y1j:A 502 46 0.0685 0.0299 0.3261 3.9 8y1j:B
37 1ycd:B 238 98 0.1050 0.0966 0.2347 4.7 1ycd:A
38 7xc2:C 858 203 0.2237 0.0571 0.2414 5.2 7xc2:A, 7xc2:E, 7xc2:G, 7xc2:I, 7xe0:A, 7xe0:C, 7xe0:E, 7xe0:G, 7xe0:I, 7xx2:A, 7xx2:C, 7xx2:E, 7xx2:G, 7xx2:I
39 4xch:A 149 95 0.1324 0.1946 0.3053 5.5 4xch:B, 4xch:C, 4xch:D
40 6tz8:D 373 34 0.0502 0.0295 0.3235 5.5 6tz8:A
41 3wdm:A 259 35 0.0685 0.0579 0.4286 5.6 4mb2:A, 4mb2:B, 4mb2:C, 4mb2:D, 3wdk:A, 3wdk:B, 3wdk:C, 3wdk:D, 3wdl:A, 3wdl:B, 3wdl:C, 3wdl:D, 3wdm:B, 3wdm:C, 3wdm:D
42 7ne7:A 677 33 0.0548 0.0177 0.3636 6.0 7ne4:A, 7ne5:A, 7ob1:A, 7ywp:A
43 7yw3:A 205 39 0.0594 0.0634 0.3333 8.1
44 6upk:G 423 38 0.0594 0.0307 0.3421 9.4 6upl:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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