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BioLiP
>protein
SHMQASLLKVPYFVRVQGLLRICALARKIAGGHYVQMAIIKLGALTGTYVYNHLTPLRDWAHNGLRDLAVAVEPVVFSRM
ETKLITWGADTAACGDIINGLPVSARRGQEILLGPADGMVSKGWRLL

The query sequence (length=127) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2hd0:G 127 127 1.0000 1.0000 1.0000 1.45e-91
2 6zzo:C 265 126 0.2598 0.1245 0.2619 0.028 6zzo:A, 6zzo:B, 6zzo:D, 6zzp:A, 6zzp:B, 6zzp:C, 6zzp:D
3 3b8e:A 998 78 0.1890 0.0240 0.3077 2.9 3b8e:C, 7d91:A, 7d92:A, 7d93:A, 7d93:C, 7d94:A, 7d94:C, 7ddf:A, 7ddf:C, 7ddh:A, 7ddh:C, 7ddi:A, 7ddi:C, 7ddk:A, 7ddk:C, 7ddl:A, 7ddl:C, 7e1z:A, 7e20:A, 7e21:A, 4hqj:A, 4hqj:C, 4hyt:A, 4hyt:C, 8jbk:A, 8jbk:C, 8jbl:A, 8jbl:C, 8jbm:A, 8jbm:C, 3kdp:A, 3kdp:C, 1mo8:A, 3n23:A, 3n23:C, 7qtv:A, 7qtv:C, 4res:A, 4res:C, 4ret:A, 4ret:C, 3wgu:A, 3wgu:C, 3wgv:A, 3wgv:C, 7wys:A, 7wys:C, 7wyt:A, 7wyt:C, 4xe5:A, 7yzr:A, 7yzr:C, 7z04:A, 7z04:C
4 2j0f:A 446 51 0.1417 0.0404 0.3529 3.1 2j0f:B, 2j0f:C, 1uou:A, 2wk6:A, 2wk6:B
5 1o7k:A 124 42 0.0945 0.0968 0.2857 4.4 1o7k:B, 1o7k:C
6 3ov0:A 318 32 0.0945 0.0377 0.3750 5.5 3oue:A, 3ouq:A, 1rwj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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