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BioLiP
>protein
SHMNTNMVASELGVSAKTVQRWVKQLNLPAERNELGHYSFTAEDVKVLKSVKKQISEGTAIQDIHL

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5i44:B 68 66 1.0000 0.9706 1.0000 1.32e-44 5i44:A, 5i44:D, 5i44:E, 5i44:H, 5i44:J, 5i44:K, 5i44:G, 5i44:F, 5i44:I
2 5c8d:E 280 52 0.2727 0.0643 0.3462 1.07e-05 8c31:A, 8c31:B, 8c31:C, 8c31:D, 8c32:A, 8c32:B, 8c32:C, 8c32:D, 8c33:A, 8c33:B, 8c33:C, 8c33:D, 8c34:A, 8c34:B, 8c34:C, 8c34:D, 8c35:A, 8c35:B, 8c35:C, 8c35:D, 8c36:A, 8c36:B, 8c36:C, 8c36:D, 8c37:A, 8c37:B, 8c37:C, 8c37:D, 8c73:A, 8c73:B, 8c73:C, 8c73:D, 8c76:A, 8c76:B, 8c76:C, 8c76:D, 5c8a:A, 5c8a:B, 5c8a:C, 5c8a:D, 5c8d:A, 5c8d:B, 5c8d:C, 5c8d:D, 5c8d:F, 5c8d:G, 5c8d:H, 5c8e:A, 5c8e:B, 5c8e:C, 5c8e:E, 5c8e:F, 5c8e:G, 5c8e:D, 5c8e:H, 5c8f:A, 3whp:A
3 5d8c:B 128 61 0.2879 0.1484 0.3115 0.009 5d8c:A, 5e01:A, 5e01:B
4 3gp4:A 132 62 0.2879 0.1439 0.3065 0.024 3gp4:B
5 6ama:Y 57 41 0.2273 0.2632 0.3659 0.18 6ama:A, 6ama:B, 6ama:G, 6ama:H, 6ama:K, 6ama:L, 6ama:C, 6ama:D, 6ama:O, 6ama:P, 6amk:A, 6amk:B
6 8csh:D 53 48 0.2273 0.2830 0.3125 0.30 8csh:A
7 5kqd:A 312 24 0.1515 0.0321 0.4167 0.45
8 7tec:A 72 51 0.1818 0.1667 0.2353 0.52
9 4r24:B 85 63 0.2273 0.1765 0.2381 0.77 4r22:B
10 2amx:A 364 56 0.2424 0.0440 0.2857 0.99 2amx:B
11 2vz4:A 100 49 0.1970 0.1300 0.2653 1.2
12 5nrg:S 174 32 0.1667 0.0632 0.3438 1.5 7asm:T, 7asn:T, 7aso:a, 7asp:T, 6ddd:H, 6ddg:H, 6fxc:AT, 6fxc:BT, 5hkv:S, 5hl7:S, 6hma:T, 5li0:Y, 5nd8:Y, 5nd9:Y, 5ngm:AT, 7nhl:Y, 7nhm:Y, 8p2f:Y, 8p2g:Y, 8p2h:Y, 7p48:T, 6s0x:T, 6s0z:T, 6s12:T, 6s13:T, 5t7v:L8, 5tcu:L8, 7ttu:H, 7ttw:H, 4wce:S, 4wf9:S, 4wfa:S, 4wfb:S, 6wqn:H, 6wqq:H, 6wrs:H, 6wru:H, 8y36:T, 8y37:T, 8y38:T, 8y39:T, 6yef:Y
13 1nrw:A 285 49 0.2273 0.0526 0.3061 1.5
14 8q4d:D 373 27 0.1515 0.0268 0.3704 3.3 8b4h:A, 8b4h:B, 8b4h:C, 8b4h:D, 8q4d:A, 8q4d:B, 8q4d:C
15 3vgf:A 555 33 0.1667 0.0198 0.3333 3.6 3vgg:A, 3vgh:A
16 2rd5:B 283 13 0.1212 0.0283 0.6154 5.9 2rd5:A, 4usj:A, 4usj:B
17 5y86:A 395 35 0.1818 0.0304 0.3429 6.1
18 8udk:A 1012 35 0.1970 0.0128 0.3714 7.7 5c51:A, 5c52:A, 5c53:A, 4ztu:A, 4ztz:A
19 3nco:A 313 43 0.2273 0.0479 0.3488 8.5 3nco:B, 3rjy:A
20 4iuw:A 630 32 0.1515 0.0159 0.3125 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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