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BioLiP
>protein
SHMKLITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRDFVPKVRIEVVVDDSIVDKVVDSIVRAARTGKIGDGKVWV
SPVDTIVRVRTGERGHDAL

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3lf0:A 99 99 1.0000 1.0000 1.0000 1.62e-65
2 3lf0:B 112 112 0.9899 0.8750 0.8750 5.70e-61 3lf0:C
3 6yc7:A 105 105 0.6364 0.6000 0.6000 8.88e-40 6yc7:B, 6yc7:E, 6yc7:C
4 6yc7:F 94 97 0.6162 0.6489 0.6289 1.33e-39
5 4c3k:D 101 98 0.5758 0.5644 0.5816 1.29e-37 4c3k:A, 4c3k:E, 8wm7:F, 2xzw:E
6 8wm7:G 94 94 0.5253 0.5532 0.5532 4.70e-36
7 1ul3:B 94 97 0.5455 0.5745 0.5567 6.96e-35 1ul3:C
8 2xbp:A 113 112 0.5657 0.4956 0.5000 7.74e-35 4aff:A, 4c3k:C, 4c3k:F, 2xul:A, 2xul:B, 2xul:C, 2xul:D, 2xul:E, 2xul:F, 2xzw:A, 2xzw:B, 2xzw:C, 2xzw:D, 2xzw:F, 2xzw:G, 2xzw:H, 2xzw:I
9 3n5b:A 112 112 0.5354 0.4732 0.4732 1.11e-34 8wm7:E
10 2eg2:A 95 97 0.5455 0.5684 0.5567 3.04e-34
11 5l9n:A 92 92 0.5354 0.5761 0.5761 3.50e-32
12 4cnz:A 100 100 0.5051 0.5000 0.5000 2.65e-31 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B
13 7p4v:A 113 113 0.5455 0.4779 0.4779 2.71e-31
14 2gnk:A 95 97 0.4747 0.4947 0.4845 8.70e-30
15 4cnz:E 112 112 0.5051 0.4464 0.4464 1.68e-29 4cnz:C, 4cnz:F, 4co0:A, 4co0:B, 4co1:A, 4co1:B, 4co2:A, 4co2:B, 4co3:A, 4co3:B, 3mhy:A, 3mhy:C, 3mhy:B
16 2j9d:B 103 100 0.5354 0.5146 0.5300 3.33e-29 2j9d:H, 2j9d:K
17 2ns1:B 113 112 0.4848 0.4248 0.4286 6.93e-29 2nuu:G, 2nuu:H, 2nuu:I, 2nuu:J, 2nuu:K, 2nuu:L
18 7p50:A 121 112 0.5253 0.4298 0.4643 4.47e-27 7p50:B, 7p50:C
19 2j9e:B 119 112 0.5354 0.4454 0.4732 9.27e-27 2j9c:A, 2j9c:C, 2j9c:B, 2j9d:C, 2j9d:E, 2j9d:F, 2j9d:I, 2j9d:J, 2j9d:L, 2j9e:A, 2j9e:C, 7p52:A
20 3ta0:C 99 91 0.4545 0.4545 0.4945 1.39e-26 3ta0:A, 3ta0:B, 3ta0:D, 3ta0:E, 3ta0:F
21 3ta1:D 115 105 0.4545 0.3913 0.4286 1.72e-24 3ta1:A, 3ta1:C, 3ta1:B, 3ta1:E, 3ta1:F, 3ta2:A, 3ta2:B, 3ta2:C
22 1v3s:A 97 93 0.4444 0.4536 0.4731 1.90e-24 1v3s:B, 1v3s:C, 1v9o:A, 1v9o:B, 1v9o:C
23 2o66:B 108 98 0.4444 0.4074 0.4490 2.83e-24 2o66:A, 2o66:C, 2o67:A, 2o67:B, 2o67:C
24 3ncr:C 116 112 0.4747 0.4052 0.4196 8.43e-24 3ncq:A, 3ncq:B, 3ncq:C, 3ncr:A, 3ncr:B
25 2rd5:D 126 114 0.4545 0.3571 0.3947 2.22e-22 2rd5:C
26 7o4x:A 103 100 0.4040 0.3883 0.4000 5.35e-20
27 4ozl:A 104 97 0.4343 0.4135 0.4433 3.54e-19 4ozn:B
28 4ozn:A 116 109 0.4343 0.3707 0.3945 1.94e-15 4ozj:A, 4ozn:C
29 4usj:C 142 109 0.3838 0.2676 0.3486 3.49e-13 4usi:A, 4usi:C, 4usi:B, 4usj:D
30 4rx6:B 115 113 0.3232 0.2783 0.2832 2.19e-12 4r25:A, 4rx6:A, 4rx6:D
31 4yd9:A 1656 54 0.1515 0.0091 0.2778 0.017 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
32 8esq:t 235 38 0.1515 0.0638 0.3947 0.25 8esr:t, 8etg:t, 8eth:t, 8eti:t, 8ev3:t
33 5i10:A 192 60 0.1515 0.0781 0.2500 1.1
34 7v6c:B 260 60 0.1818 0.0692 0.3000 1.7
35 3mcx:A 459 66 0.1717 0.0370 0.2576 2.4
36 8s5h:A 507 41 0.1414 0.0276 0.3415 3.8 4coo:A, 4coo:B, 1jbq:A, 1jbq:B, 1jbq:C, 1jbq:D, 1jbq:E, 1jbq:F, 4l0d:A, 4l0d:B, 4l27:B, 4l27:D, 4l27:A, 4l27:C, 4l28:A, 4l28:B, 4l28:C, 4l28:D, 4l3v:B, 4l3v:A, 4l3v:C, 1m54:A, 1m54:B, 1m54:C, 1m54:D, 1m54:E, 1m54:F, 5mms:A, 5mms:F, 5mms:B, 5mms:C, 5mms:D, 5mms:E, 4pcu:A, 4pcu:B, 7qgt:A, 7qgt:B, 8s5h:B, 8s5h:C, 8s5h:D, 8s5h:E, 8s5h:F, 8s5h:G, 8s5h:H, 8s5i:A, 8s5i:B, 8s5i:C, 8s5i:D, 8s5i:E, 8s5i:F, 8s5j:A, 8s5j:B, 8s5j:C, 8s5j:D, 8s5j:E, 8s5j:F, 8s5j:G, 8s5j:H, 8s5j:I, 8s5j:J, 8s5k:A, 8s5k:B, 8s5k:C, 8s5k:D, 8s5k:E, 8s5k:F, 8s5k:G, 8s5k:H, 8s5l:A, 8s5l:B, 8s5l:C, 8s5l:D, 8s5m:A, 8s5m:B, 8s5m:C, 8s5m:D, 8s5m:E, 8s5m:F, 8s5m:G, 8s5m:H, 8s5m:I, 8s5m:J, 8stw:A, 8stw:B, 8stw:C, 8stw:D, 8stw:E, 8stw:F, 4uuu:A, 4uuu:B
37 5ohx:A 488 47 0.1414 0.0287 0.2979 3.9 5ohx:B
38 8b9y:C 330 42 0.1616 0.0485 0.3810 5.2 8b9y:A, 8b9y:B, 8b9y:D
39 2isq:A 320 75 0.2121 0.0656 0.2800 5.4 1z7w:A, 1z7y:A
40 3j8h:A 3660 37 0.1313 0.0036 0.3514 5.5 3j8h:C, 3j8h:E, 3j8h:G
41 5gky:A 3660 37 0.1313 0.0036 0.3514 5.5 5gky:C, 5gky:E, 5gky:G, 5gkz:A, 5gkz:C, 5gkz:E, 5gkz:G, 5gl0:A, 5gl0:C, 5gl0:E, 5gl0:G, 5gl1:A, 5gl1:C, 5gl1:E, 5gl1:G
42 8duj:D 3865 37 0.1313 0.0034 0.3514 5.5
43 3haz:A 983 43 0.1212 0.0122 0.2791 6.7 6bsn:A, 6bsn:B, 3haz:B, 4q71:A, 4q71:B, 4q72:A, 4q72:B, 4q73:A, 4q73:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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